Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0778 ATGGATAGCGAAAACGTTGATGGCGTTGCTCACGATTTGGTTTCGCTTCTCACAAGAGAGGATCGGGACTTTCTTGTCCGCAACAATGGCCACCAGGTTAAAGTTGAGAGTTTGAAGGGGAAGAAAATTTGGCTATATTTTTCAGCATCATGGTGTGGGCCATGTCGGCGGTTCACCCCTAAATTAGTTGAGGCCTACAATGAACTCTCCTCCAACGATGATTTTGAAATCATCTTTGTTTCAGGTGATAATGATGATGAGTCGTTCAATGGATATTTCTCCAAGATGCCTTGGCTCGCAATCCCATTTTCTGATTCAGATGCACGAGATCAGTTGAATGAACTGTTCAAGGTGATGGGGATTCCAAACCTTGTGATGCTTGATGAATCTGGCAAGGTTTTGAGCGAAGATGGGGTTGATATCATACAAGAGTATGGAGTGGAAGCTTATCCTTTCACTCCTGAAAAGATCAAAGAAATGAAAGAGAAGGAAGAAACAGCCAGGAAGGAACAATCCTTGAGATCCATCTTAGTCTCTCAGTCCCGTGACTATGTAATTTCAACTGATGGAAAGAAGGTGCCTGTGTCTGAACTAGAAGGGAAGTTCGTTGGGCTGTTTTTCTCATTGTCTTCCTACAAGGCATGCCTTGAATTTACTCCAACGCTAGTGGATGTTTACGAGAAATTAAGGGCAAAGGGGGAGAGCTTTGAAATTGTCATGATATCACTTGATGATGAGGAAGAATCATTCAAAAAATATTTTGGAAGCATGCCTTGGCTTGCATTGCCCTTCAGGGACAAGAGCTGTGAGAAACTAGCTCGCTACTTTGAGCTCTCAGCCCTGCCCACTTTGGTTGTTATTGGGCCAGATGGAAAGACTCTTCACTCCAATGTTGCCGAGGCAATCCAAGAACATGGGATTCAGGCATACCCTTTTACCCCAGAGAAGTTTGCAGAGCTTGAGGAGATTGAGAAGGCAAAACGGGAAGCACAGACACTGGAGTCAATTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCACATTGGTGCCCCCCATGCCGTGCTTTTCTACCAAAACTTATTGAAGCATACCAGAAGATTAAGACAAAGGATGAAGCATTCGAAGTGATTTTCATCTCTAGTGACAAGGACCAGACCTCCTTCGATGAATTCTTTTCAGGTATGCCATGGCTGGCACTTCCGTTTGGGGATAAAAGGAAGGCCTCCCTGAGTCGCACGTTCAAGGTCCATGGCATCCCCTCGCTCATAGCCATTGGGCCAACTGGCCGGACTGTCACAACAGAAGCCAGAAATCTTGTTATGATTCATGGGGCTGATGCTTATCCTTTCACTGAAGAACATATAAGGGAGATCGAGGCGCAGTATGAGGAGATGGCAAAGGGGTGGCCTGAGAAGGTGAAGCATGCTCTTCATGAAGAGCATGAGCTTGTGCTCACTAAGCGTCGCGTTTATGTATGTAATGGGTGTGAGAAGCAGGGACACTTGTGGTCATTCTATTGTGAAGAATGTGATTTCGATCTCCACCCCAAGTGCGCACTGGAAGAAGACAAAGGAAGCAAAGACGATGAGATGGAGAAGGCAAGTCCCGGAGAAGGATGGAAATGTGATGGGGAGGTGTGTTACAAAGCTTGA 1719 0.4561 MDSENVDGVAHDLVSLLTREDRDFLVRNNGHQVKVESLKGKKIWLYFSASWCGPCRRFTPKLVEAYNELSSNDDFEIIFVSGDNDDESFNGYFSKMPWLAIPFSDSDARDQLNELFKVMGIPNLVMLDESGKVLSEDGVDIIQEYGVEAYPFTPEKIKEMKEKEETARKEQSLRSILVSQSRDYVISTDGKKVPVSELEGKFVGLFFSLSSYKACLEFTPTLVDVYEKLRAKGESFEIVMISLDDEEESFKKYFGSMPWLALPFRDKSCEKLARYFELSALPTLVVIGPDGKTLHSNVAEAIQEHGIQAYPFTPEKFAELEEIEKAKREAQTLESILVSGDRDFVIGKDGVKIPVSDLVGKNILLYFSAHWCPPCRAFLPKLIEAYQKIKTKDEAFEVIFISSDKDQTSFDEFFSGMPWLALPFGDKRKASLSRTFKVHGIPSLIAIGPTGRTVTTEARNLVMIHGADAYPFTEEHIREIEAQYEEMAKGWPEKVKHALHEEHELVLTKRRVYVCNGCEKQGHLWSFYCEECDFDLHPKCALEEDKGSKDDEMEKASPGEGWKCDGEVCYKA* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0778 572 SUPERFAMILY Thioredoxin-like 25 134 IPR036249 -
Vvi1g0778 572 FunFam Probable nucleoredoxin 1 336 473 - -
Vvi1g0778 572 SUPERFAMILY Thioredoxin-like 185 296 IPR036249 -
Vvi1g0778 572 Pfam C1 domain 499 541 IPR004146 -
Vvi1g0778 572 SUPERFAMILY Thioredoxin-like 347 455 IPR036249 -
Vvi1g0778 572 ProSitePatterns Thioredoxin family active site. 364 382 IPR017937 -
Vvi1g0778 572 Gene3D Glutaredoxin 16 153 - -
Vvi1g0778 572 Gene3D Glutaredoxin 176 313 - -
Vvi1g0778 572 Gene3D Glutaredoxin 337 473 - -
Vvi1g0778 572 CDD TryX_like_TryX_NRX 23 152 IPR045870 GO:0004791
Vvi1g0778 572 SUPERFAMILY Cysteine-rich domain 490 542 IPR046349 -
Vvi1g0778 572 Pfam Thioredoxin-like 41 133 IPR012336 -
Vvi1g0778 572 Pfam Thioredoxin-like 200 292 IPR012336 -
Vvi1g0778 572 Pfam Thioredoxin-like 361 452 IPR012336 -
Vvi1g0778 572 CDD TryX_like_TryX_NRX 343 472 IPR045870 GO:0004791
Vvi1g0778 572 ProSiteProfiles Thioredoxin domain profile. 322 482 IPR013766 -
Vvi1g0778 572 PANTHER THIOREDOXIN 8 306 - -
Vvi1g0778 572 ProSiteProfiles Thioredoxin domain profile. 1 162 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0778 Vvi-Chr1 7930689 7932870 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0778 K17609 - vvi:100852822 1158.28