Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1082 ATGGCGGATTCTGCAGATGTCACGCACGATGTTGTGTCCCTCCTTTCTTCTCCCCAAAGGGACTTTCTTATTCGGAACAACGGCGATCAGGTTAAAATTGACAGCTTGAAGGGAAAGAAACTTGGTTTGTATTTTTCAGCATCCTGGTGTGGCCCCTGTCAAAGATTTACACCAACTTTGGTGGAGGTGTACAATGAAGTTGCTTCAAAAGGTGACTTTGAGATCATTTTTGTCACGGctgatgaagatgatgaggcatttaaaagttacttttccaAGATGCCATGGCTTGCAATCCCATTTTCTGATTCAGAGACACGCAGTCGCCTTGATGAATTGTTTCATGTGAGGGGGATTCCCCATCTTGCGTTACTTGATGAAACTGGGAAAGTTGTCACTGAAGATGGAGCTGATGTTATACGTGAATATGGTGTTGAAGGATACCCCTTTACATCAGCAAGGATCCAAGAGCTGAATGATCAAGAAGAGGAATCTAGGAGGAACCAGTCCGTGACATCTCTCTTGGTCTCTCCATCTCGTGACTTTGTTATATCCTCTGATGGAAAGAAAATACTTGTCTCTGAGCTTGAGGGCAAGACTGTTGGTCTGTATTTCTCAATGAATTCATACGGATTATGCAGTGACTTTACTCCACAGCTTGTGGAGGTTTATGAGAAGCTGAAGGCCAAGGGTGAGAACTTTGAGGTTGTGCTGATACCCttagatgaagatgaagaaTCATTCAAGGATGGATTAGAAAGTGTGCCTTGGTTATCCTTGCCTTTCAAGGACAAAATCTGTGCGAAGCTGGCTCGGTACTTTGAGCTTTCAACCCTCCCCACTTTGGTTATTATTGGGTCAGATGGGAAAACTCTTCATCCTAATGTTGCTGAGGCTATTGAGGAACATGGGATTGCTGCATACCCATTCACTCCTGAAAAGTTTGCTGAGCTTGATGAAATAATGAAGGCCAAGGAGGCAGCTCAAACCATTGAGACAATTTTGGTGTTTGGGGACCAAGATTTTGTCATTGGGAAAGATGGGGTGAagATTCTAGTGTCAGAATTAAAGGGGAAGGTTGTGCTTCTCTACTTCTCAGCCCACTGGTGTCCTCCATGCCGTGCATTCCTTCCAAAACTAATTGATGCATATCATAAGATTAAGGCAAAGGACAATGCATTAGAAGTCGTGTTCATCTCAAGCGACAAAGATCAAGCTGCCTTTGATGAATTCTTTGCAGGAATGCCATGGTTGGCACTTCCCTTTGGCGACTCGAGGAAGAAATTCCTAAGCCGCAAGTTCAGGGTATCTGGCATCCCCATGCTGGTGGCCATTGGATCAAGTGGCCAGACTGTGACAAAAGAAGCTGGAGATCTGGTTTCTCTTTATGGGGCAGATGCTTATCCTTTCACTGAGGAGAGAATAAAAGAGATAGAGGCAGAACAAGAGGAGACTGCAAAGGGGTGGCCAGAGAAGGTGACTCATGAAAAACATGAGCATGAGCTTGTGTTGACGCGCCGCAGGGTGTATTATTGTGATGGTTGCGAAGAAGAGGGGCGTGTATGGTCTTACTACTGTGGAGAGTGTGACTTTGATCTCCATCCAAATGTGCATTGGAGGACAAAGGAAACAAAGATGATGCCAAGGGAGAAGAGAAGTCCAAAGATGGATGGGTTTGTGACGGAGAAGTCTGCAAGAAAGCCTGAAAGCTGCATGTGA 1719 0.4375 MADSADVTHDVVSLLSSPQRDFLIRNNGDQVKIDSLKGKKLGLYFSASWCGPCQRFTPTLVEVYNEVASKGDFEIIFVTADEDDEAFKSYFSKMPWLAIPFSDSETRSRLDELFHVRGIPHLALLDETGKVVTEDGADVIREYGVEGYPFTSARIQELNDQEEESRRNQSVTSLLVSPSRDFVISSDGKKILVSELEGKTVGLYFSMNSYGLCSDFTPQLVEVYEKLKAKGENFEVVLIPLDEDEESFKDGLESVPWLSLPFKDKICAKLARYFELSTLPTLVIIGSDGKTLHPNVAEAIEEHGIAAYPFTPEKFAELDEIMKAKEAAQTIETILVFGDQDFVIGKDGVKILVSELKGKVVLLYFSAHWCPPCRAFLPKLIDAYHKIKAKDNALEVVFISSDKDQAAFDEFFAGMPWLALPFGDSRKKFLSRKFRVSGIPMLVAIGSSGQTVTKEAGDLVSLYGADAYPFTEERIKEIEAEQEETAKGWPEKVTHEKHEHELVLTRRRVYYCDGCEEEGRVWSYYCGECDFDLHPNVHWRTKETKMMPREKRSPKMDGFVTEKSARKPESCM 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1082 572 PANTHER THIOREDOXIN 4 537 - -
Ssu5g1082 572 Gene3D Glutaredoxin 174 311 - -
Ssu5g1082 572 Gene3D Glutaredoxin 334 471 - -
Ssu5g1082 572 Gene3D Glutaredoxin 14 152 - -
Ssu5g1082 572 ProSitePatterns Thioredoxin family active site. 362 380 IPR017937 -
Ssu5g1082 572 CDD TryX_like_TryX_NRX 341 470 IPR045870 GO:0004791
Ssu5g1082 572 Pfam Thioredoxin-like 358 450 IPR012336 -
Ssu5g1082 572 Pfam Thioredoxin-like 39 131 IPR012336 -
Ssu5g1082 572 Pfam Thioredoxin-like 198 290 IPR012336 -
Ssu5g1082 572 SUPERFAMILY Thioredoxin-like 184 293 IPR036249 -
Ssu5g1082 572 Pfam C1 domain 497 535 IPR004146 -
Ssu5g1082 572 PANTHER NUCLEOREDOXIN 1-2-RELATED 4 537 - -
Ssu5g1082 572 SUPERFAMILY Thioredoxin-like 24 133 IPR036249 -
Ssu5g1082 572 SUPERFAMILY Cysteine-rich domain 489 536 IPR046349 -
Ssu5g1082 572 MobiDBLite consensus disorder prediction 544 572 - -
Ssu5g1082 572 SUPERFAMILY Thioredoxin-like 344 457 IPR036249 -
Ssu5g1082 572 CDD TryX_like_TryX_NRX 21 150 IPR045870 GO:0004791
Ssu5g1082 572 ProSiteProfiles Thioredoxin domain profile. 11 160 IPR013766 -
Ssu5g1082 572 ProSiteProfiles Thioredoxin domain profile. 322 480 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1082 Ssu-Chr5 34375172 34377839 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1082 K17609 - gmx:100809224 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1082 5 34375172 34377839 Ssu5g1082 5 34375172 34377839 ECH