Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03245 ATGGCAGTATCTGCGGATGTCACCCACGATGTTGTGTCTCTCCTCTCTTCACCCGAAAGGGACTATCTTCTGAGGAACAACGGCGATCAGGTGAAAATTGAGAGCTTGAAGGGAAAGAAAATTGGTATATATTTTTCGGCATCCTGGTGTGGTCCCTGTCGAAAATTCACGCCAACTTTGGTGGAGGCATACAATGAGGTTGTGTCAAAAGGTGACTTTGAGGTCGTTTTTGCCTCGGCTGATGAAGATGACGAGGCTTTTAAAGGGTACTTTTCCAAGATGCCATGGCTTGCAATTCCATTTTCTGATTCAGAGACACGCAGCCGCCTTGATGAATTGTTTCAAGTGAGGGGGATTCCCAATCTCGTGTTACTTGATGAAACTGGCAAAGTTGTGACTGAAGATGGAGTTGATATTGTACGTGAATATGGTGTTGAAGCATACCCCTTTACATCAGCAAGGATCCAAGAATTGAGAGATCGGGAAGAGGAAGCAAGGAGGAACCAGTCCGTGAGATCACTCTTGATCTCTCCATCTCGTGACTTTGTTATATCATCCAATGGAAACAATGTACCTGTCTCTGAGCTTGAGGGCAAGACAGTTGGGCTGTATTTCTCTCATAGCTCATTCGCACCAAGCAGTGACTTTACTCCAAAGCTTGTGAAGGCTTATGAGGAGCTGAAAGCCAGGGGGGAGAACTTTGAGGTTGTATTGATACCCTTAGATGAAGATGAAGAAGCATTTAAGGAAATATTGGGAAGTGTGCCTTGGTTATCCTTGCCTTTCAAGGACAAATTCTGCGGGAAGCTGGCTCAGTACTTTGAGCTTTCAACCCTCCCCACTTTGGTTATCATTGGGCCTGATGGGAAAACTCTTAATGCTAATGTTGCTGAGGCTATTGAGGATCATGGGGTTGAGGCATACCCTTTCACTCCTGAAAAGTTTGCTGAGCTTGATGAAATTTTGAAGGCCAGGGAGGCAGCTCAAACCCTTGAGTCAATTTTGGTGTCTGAGGATCTTGATTTTGTCATTGGCAAAGATGGGGCGCAGGTTCCTGTGTCCGAATTAAATGGGAAGACCGTTCTGCTTTACTTCTCAGCACACTGGTGTCCTCCATGCCGCGCATTCCTTCCAAAACTTGTTGATGCATATCATGAGATTAAGGCAAAGGGCAATGCTTTAGAAGTTGTTTTCATCTCCAGCGACAAAGATCAAGCCTCCTTTGATGAATTCTTTGGAGGAATGCCATGGTTAGCACTTCCCTTTGGCGACTCTAGGAAGAGATTCTTGAGTCGCAAGTTCAGGGTATCTGGCATCCCCATGCTTGTGGCTATTGGATCAAATGGCCGAACTTTGACAACTAAGGCTCGAGATATGGTTTTGCAATATGGTGCTCGTGCATACCCTTTCACTGATGAGAAAATAAAGGAATTAGAGGCAGAAGAAGATGAGATTGCAAAGGGGTGGCCTGAGAAGTTGACACATGAAACACATGAGCATGAGCTTGTGTTGACACGCCGCAGGGTGTATTACTGTGATGGATGCAATGAACAGGGCCACGCATGGTCGTATTACTGTGAAAAGTGTGACTTTGATCTGCATCCAAAATGTGTGTTGAAGGAGGAGGACAAAGGAAGCAAAGATGACCCTGACGTTAAGGAAGAAGACAAGTCCAAAGATGGATGGGTTTGTGATGGAGAAGTCTGCAAAAAAGTCTGA 1719 0.4532 MAVSADVTHDVVSLLSSPERDYLLRNNGDQVKIESLKGKKIGIYFSASWCGPCRKFTPTLVEAYNEVVSKGDFEVVFASADEDDEAFKGYFSKMPWLAIPFSDSETRSRLDELFQVRGIPNLVLLDETGKVVTEDGVDIVREYGVEAYPFTSARIQELRDREEEARRNQSVRSLLISPSRDFVISSNGNNVPVSELEGKTVGLYFSHSSFAPSSDFTPKLVKAYEELKARGENFEVVLIPLDEDEEAFKEILGSVPWLSLPFKDKFCGKLAQYFELSTLPTLVIIGPDGKTLNANVAEAIEDHGVEAYPFTPEKFAELDEILKAREAAQTLESILVSEDLDFVIGKDGAQVPVSELNGKTVLLYFSAHWCPPCRAFLPKLVDAYHEIKAKGNALEVVFISSDKDQASFDEFFGGMPWLALPFGDSRKRFLSRKFRVSGIPMLVAIGSNGRTLTTKARDMVLQYGARAYPFTDEKIKELEAEEDEIAKGWPEKLTHETHEHELVLTRRRVYYCDGCNEQGHAWSYYCEKCDFDLHPKCVLKEEDKGSKDDPDVKEEDKSKDGWVCDGEVCKKV 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03245 572 ProSitePatterns Thioredoxin family active site. 362 380 IPR017937 -
Viun3g03245 572 ProSiteProfiles Thioredoxin domain profile. 11 160 IPR013766 -
Viun3g03245 572 SUPERFAMILY Cysteine-rich domain 488 539 IPR046349 -
Viun3g03245 572 SUPERFAMILY Thioredoxin-like 184 292 IPR036249 -
Viun3g03245 572 CDD TryX_like_TryX_NRX 21 150 IPR045870 GO:0004791
Viun3g03245 572 ProSiteProfiles Thioredoxin domain profile. 325 480 IPR013766 -
Viun3g03245 572 CDD TryX_like_TryX_NRX 341 470 IPR045870 GO:0004791
Viun3g03245 572 SUPERFAMILY Thioredoxin-like 24 132 IPR036249 -
Viun3g03245 572 Pfam C1 domain 497 538 IPR004146 -
Viun3g03245 572 Gene3D Glutaredoxin 335 472 - -
Viun3g03245 572 Gene3D Glutaredoxin 174 311 - -
Viun3g03245 572 Gene3D Glutaredoxin 14 152 - -
Viun3g03245 572 SUPERFAMILY Thioredoxin-like 344 454 IPR036249 -
Viun3g03245 572 PANTHER THIOREDOXIN 5 304 - -
Viun3g03245 572 Pfam Thioredoxin-like 198 290 IPR012336 -
Viun3g03245 572 Pfam Thioredoxin-like 38 131 IPR012336 -
Viun3g03245 572 Pfam Thioredoxin-like 358 450 IPR012336 -
Viun3g03245 572 ProSiteProfiles Thioredoxin domain profile. 173 324 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03245 Viun-Chr3 39260355 39263353 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03245 K17609 - gmx:100809224 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03245 3 39260355 39263353 Viun3g03245 3 39260355 39263353 ECH