Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01818 ATGGCAGATTCTGTTGAAGTTACTCACGATTTTCACTCTATTCTCTCTTCTCCCGATAGAGATTTTCTCATTCGGAACAACGGCGATCAGGTTAAAATTGACAGTTTGAAGGGAAAGAAACTAGGTTTCTATTTTTCAGCATCATGGTGTGGTCCGTGTCGAAGATTCACACCAACGTTGGTGGAGGTGTACAATGAACTCTCTCCAAAGGGTGAATTTGAGGTTGTTTTTCTCTCCGCTGACGAAGATGATGAGGCCTTTCAGAGCTACTTTTCCAAGATGCCGTGGTTGGCTGTACCCTATTCTGATTCAGAGACACGCAGTCGTCTTGATGATTTGTTTCATGTAAACGGCATTCCTCATCTTGCATTGCTAGATGAAACTGGAAAAGTTGCCGCTGAAGATGTAGTTGACATTATCCGTGAGCATGGAGCTGAAGGATACCCTTTCACATCACAAAGGGTCCAGGACTTGAAAGATCAAGAAGAGGAAGCTAAGAGGAACCAGTCCTTGAAGTCTATATTGGTCTCTAGTTCTCGCGACTTTGTGATATCTGCAGATGGAAAAAAAACACCTATCTCTGAGCTTGAGGGGAAGACAGTTGGTCTGTATTTTTGCGCGACTTCATACAGATCATGTGCAGTATTTACTCAACAGCTTAAGGAGGTTTACAAGAAGCTGAAGGAAAATGGGGAGAACTTTGAGGTTGTGTTTATACCTGTAGATGACGAGGAAGAGTCATTCCAGAAAGAATTAGAAAGTTTGCCTTGGGTATCCTTGCCTCTCAAGGACAAAACCTGTGCGAAACTAATTCAGTACTTTGAGTTATCAGAGCTCCCCACCTTGGTTATTATTGGGCCAGATGGGAAAACTCTTCATACTAATGTTGCTGAGGCCATTGCCGATCATGGGATTGTTGCATATCCATTCACTCCTGAAAAGTTTGTCGAGCTCGAAGAATTAGCAAAGGCCAAGGAGGCATCTCAAACACTTGAGTCATTTTTGGTGTCTGGGGATCAAGATTTTGTTATTAAGAACGGCGGAGAGAACCTTCCGGTGTCAGAATTAGTGGGAAAGACTGTCCTCCTCTACTTCTCAGCCCAATGGTGTCCTCCATGCCGTGCATTTCTTCCAAAACTCATTGATGCATACCATAAGATTAAGGCACAAGATAATGGTGCACTAGAAGTCGTTTTCATCTCAAGTGATAGGGATCAAGACTCCTTTGATGATTTCTTTAAGGAAATGCCATGGCTGGCACTTCCCTTTGGTGACTCAAGGAAAGAATTACTGAGTCGCAAATTCAAGGTATCTGGCATCCCCAAGCTCGTGGCAATCGGACCAAGTGGCCGGACTGTCACACATGAAGCTCGAGATCTGGTTGGGCTTCATGGAGCAGATGCTTATCCCTTCACTGAGGAGAGAATCAAAGAAATAGAGGCACAAAGAGATGAAATTGCAAAGGGGTGGCCTGAGAAGGTGACGCATGAAACACATGAGCATGAGCTTATATTAGCACGCCGCAGGGTTTATTACTGTGATGGTTGCAATGAGGAGGGACATGATTGGTCATACTACTGTGAAGACTGTGACTTTGATCTCCATCCAAATTGTGCACTGGGAGACAAAGAAAGCATAAATGGTGCCAAGGAAGAAGAGAAGCCCCAAAATGGATGGGTTTGTGATGGAGATGTCTGCACCAAAGCCTGA 1710 0.4421 MADSVEVTHDFHSILSSPDRDFLIRNNGDQVKIDSLKGKKLGFYFSASWCGPCRRFTPTLVEVYNELSPKGEFEVVFLSADEDDEAFQSYFSKMPWLAVPYSDSETRSRLDDLFHVNGIPHLALLDETGKVAAEDVVDIIREHGAEGYPFTSQRVQDLKDQEEEAKRNQSLKSILVSSSRDFVISADGKKTPISELEGKTVGLYFCATSYRSCAVFTQQLKEVYKKLKENGENFEVVFIPVDDEEESFQKELESLPWVSLPLKDKTCAKLIQYFELSELPTLVIIGPDGKTLHTNVAEAIADHGIVAYPFTPEKFVELEELAKAKEASQTLESFLVSGDQDFVIKNGGENLPVSELVGKTVLLYFSAQWCPPCRAFLPKLIDAYHKIKAQDNGALEVVFISSDRDQDSFDDFFKEMPWLALPFGDSRKELLSRKFKVSGIPKLVAIGPSGRTVTHEARDLVGLHGADAYPFTEERIKEIEAQRDEIAKGWPEKVTHETHEHELILARRRVYYCDGCNEEGHDWSYYCEDCDFDLHPNCALGDKESINGAKEEEKPQNGWVCDGDVCTKA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01818 569 Gene3D Glutaredoxin 170 311 - -
Vifa4g01818 569 Gene3D Glutaredoxin 328 472 - -
Vifa4g01818 569 Gene3D Glutaredoxin 15 152 - -
Vifa4g01818 569 SUPERFAMILY Cysteine-rich domain 488 542 IPR046349 -
Vifa4g01818 569 CDD TryX_like_TryX_NRX 21 150 IPR045870 GO:0004791
Vifa4g01818 569 SUPERFAMILY Thioredoxin-like 346 454 IPR036249 -
Vifa4g01818 569 ProSiteProfiles Thioredoxin domain profile. 11 145 IPR013766 -
Vifa4g01818 569 CDD TryX_like_TryX_NRX 341 471 IPR045870 GO:0004791
Vifa4g01818 569 Pfam Thioredoxin-like 198 290 IPR012336 -
Vifa4g01818 569 Pfam Thioredoxin-like 39 131 IPR012336 -
Vifa4g01818 569 Pfam Thioredoxin-like 358 451 IPR012336 -
Vifa4g01818 569 SUPERFAMILY Thioredoxin-like 184 294 IPR036249 -
Vifa4g01818 569 PANTHER THIOREDOXIN 5 304 - -
Vifa4g01818 569 SUPERFAMILY Thioredoxin-like 24 135 IPR036249 -
Vifa4g01818 569 ProSitePatterns Thioredoxin family active site. 362 380 IPR017937 -
Vifa4g01818 569 Pfam C1 domain 498 539 IPR004146 -
Vifa4g01818 569 ProSiteProfiles Thioredoxin domain profile. 171 324 IPR013766 -
Vifa4g01818 569 ProSiteProfiles Thioredoxin domain profile. 325 481 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01818 Vifa-Chr4 515972945 515975329 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01818 K17609 - gmx:100809224 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01818 4 515972945 515975329 Vifa4g01818 4 515972945 515975329 ECH