Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0775 ATGGCTAGCGAAAACGTTGATGGCGTTGCTCACGATTTGGTTCCGCTTCTCACAAGAGAGGATCGGGACTTTCTTGTCCGCTGCAATGGCCACCAGGTTAAAGTTGAGAGTTTAAAGGGGAAGAAAATTTGGCTATATTTTTCAGCATCATGGTGTGGACCACGTCGGCAATTCACCCCTGAATTAGTAGAGGTGTACGATGAATTCTCCTCCAAAGGCGATTTTGAAATCATCTTTGTTTCACGTGACAAAGGCGATCAGTTGTTCAATGAATATTTCTCCAAGATGCCCTGGCTTGCAATCCCATTTTCTGATTCGGACACGCGTGATCACTTGAAGAAATTGTTCAAGGTGAGGGGGATTCCAAGCCTTGCGATGCTTGATGAATCTGGCAAGGTTTTGAGCAGTGAGGGAGTTGAGATCATAAAAGATTATGGAGTGGAAGGGTATCCTTTCACAGCTGAAAAGATCAAAGAACTGAAGGAAAAGGAAGAAACGGCCAAGAAGGAACAATCCTTGATATCCATCTTAGTCTCACAATCCCGCGACTATGTAATTTCAACTGATGGAAAGAGGGTGCCTGTGTCTGAACTAGAAGGGAAGTTCGTTGGACTGTATTTCTCATTGTCTTCCTCCAAGCCACGCCTTCAATTTACTCGAACGCTAGTGGATGTTTATAAGAAATTAAGGGCGAAGGGGGAGAGCTTTGAAATTGTCATGATATCGCTTGATGATGAGATAGAATCATTCAAAACAAATTTTGGTAGCATGCCTTGGCTTGCATTGCCCTTCAAGGACAGGAGCTGTAAGAAACTAGCTCGCTACTTTGAGCTCTCAGCCCTGCCCACTTTGGTTGTTATTGGGCCAGATGGAAAGACTCTTCACTCCAATGTTGCCGAGGCAATCCAAGAACATGGGATTCAGGCATACCCTTTTACCCCAGAGAAGTTTGCAGAGCTTGAGGAGATTGAGAAGGCAAAACGGGAAGCACAGACACTGGAGTCAATTTTGGTTTCAGGGAACAGAGACTTTGTGATCGGGAAAGATAGAGTCAAGATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCACATTGGTGCCCCCCATGCCGCGCTTTCCTACCAAAACTTATAGAAGCATACCAGAATATTAAGGCAAAGGATGAAGCATTCGAAGTGATTTTCATCTCTAGTGACAGGGATCAGGCCTCCTTTGATGAATTCTTTTCAGGTATGCCATGGCTGGCACTTCCCTTTGGGGACAAAAGGAAAGCTTCCTTGGGTCGCACCTTCAAGGTCAGGAGCATCCCCAAGCTCATAGCCGTTGAACCAACTGGCCGGACAGTGACAACAGAAGCCAGAACTCTTGTTATGATTCATGGGGCTGATGCTTATCCTTTCACTGAAGAACATATAAAGGAGATCGAGGCGCAGTATGAGATGGCAAAGGGGTGGCCTGAGAAGATGAAACATGCCCTTCATGAAGAGCATGAGCTTGTGCTCACTAAGCGTGGCATTTATAGATGTAATGGGTGTGAGAAGCAGGGACACTTGTGGTCATTCTATTGTGAAGAATGTGATTTCAATCTCCACCCCAAGTGCGCACTGGAAGAAGACAAAGGAAGCAAAGAAGATGAGGAGAAAGCAAGGCCCGGAGAAGGATGGAAATGTGATGGGGAAGTGTGTTCCAGAGCTTGA 1713 0.4571 MASENVDGVAHDLVPLLTREDRDFLVRCNGHQVKVESLKGKKIWLYFSASWCGPRRQFTPELVEVYDEFSSKGDFEIIFVSRDKGDQLFNEYFSKMPWLAIPFSDSDTRDHLKKLFKVRGIPSLAMLDESGKVLSSEGVEIIKDYGVEGYPFTAEKIKELKEKEETAKKEQSLISILVSQSRDYVISTDGKRVPVSELEGKFVGLYFSLSSSKPRLQFTRTLVDVYKKLRAKGESFEIVMISLDDEIESFKTNFGSMPWLALPFKDRSCKKLARYFELSALPTLVVIGPDGKTLHSNVAEAIQEHGIQAYPFTPEKFAELEEIEKAKREAQTLESILVSGNRDFVIGKDRVKIPVSDLVGKNILLYFSAHWCPPCRAFLPKLIEAYQNIKAKDEAFEVIFISSDRDQASFDEFFSGMPWLALPFGDKRKASLGRTFKVRSIPKLIAVEPTGRTVTTEARTLVMIHGADAYPFTEEHIKEIEAQYEMAKGWPEKMKHALHEEHELVLTKRGIYRCNGCEKQGHLWSFYCEECDFNLHPKCALEEDKGSKEDEEKARPGEGWKCDGEVCSRA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0775 570 Pfam Thioredoxin-like 361 452 IPR012336 -
Vvi1g0775 570 Pfam Thioredoxin-like 41 133 IPR012336 -
Vvi1g0775 570 Pfam Thioredoxin-like 200 292 IPR012336 -
Vvi1g0775 570 SUPERFAMILY Thioredoxin-like 185 296 IPR036249 -
Vvi1g0775 570 Gene3D Glutaredoxin 317 473 - -
Vvi1g0775 570 Gene3D Glutaredoxin 175 313 - -
Vvi1g0775 570 Gene3D Glutaredoxin 17 154 - -
Vvi1g0775 570 Coils Coil 323 343 - -
Vvi1g0775 570 PANTHER THIOREDOXIN 8 306 - -
Vvi1g0775 570 SUPERFAMILY Thioredoxin-like 352 455 IPR036249 -
Vvi1g0775 570 ProSiteProfiles Thioredoxin domain profile. 1 162 IPR013766 -
Vvi1g0775 570 Pfam C1 domain 498 540 IPR004146 -
Vvi1g0775 570 SUPERFAMILY Cysteine-rich domain 490 541 IPR046349 -
Vvi1g0775 570 ProSitePatterns Thioredoxin family active site. 364 382 IPR017937 -
Vvi1g0775 570 CDD TryX_like_TryX_NRX 23 152 IPR045870 GO:0004791
Vvi1g0775 570 ProSiteProfiles Thioredoxin domain profile. 322 482 IPR013766 -
Vvi1g0775 570 CDD TryX_like_TryX_NRX 343 472 IPR045870 GO:0004791
Vvi1g0775 570 SUPERFAMILY Thioredoxin-like 25 134 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0775 Vvi-Chr1 7894093 7896340 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0775 K17609 - vvi:100244715 1137.09