Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03068 ATGGCTGGCTTGGTAGAAGAGGATCATCAAGTTATTGGAATTGACAAAGAGAAGGAGACTGAAGGGGGAAATAACACACGCACACATTTGGAGGAAAGAGACATGGCTCCTGCGTCAGGCAATTCAATCCACAGGTCGAGTTCAAGGCCTCAACTTGATGTCAGCAAAGCTGAAATTCAAGGAAATGTGGGGGAGAAGTATCCTTCCATTTTGTTGCCCAATCAATCTGATGATTTAATTCACATGGCTCTTGACATTGGAGGATCACTGATAAAGTTGGTGTACTTTTCAAGACATGAAGACAAATCAACTGATGATAAAAGGAAGAGAAGTGTGAAGGAGCGACTGGGGCTTTCTAATGGTAACAGGAGAAGCTACCCTATTCTTGGTGGGAGGCTTCACTTTGTGAAGTTTGAAACAAGAAAGATCAATGAGTGCTTGGATTTCATTCATTCAAAGCAGCTTCACTATGGTGGGTTGGAGTCACGCTACTCTGATGCTGTGGGTGACCAGAATGGCATAATCAAGGCTACTGGTGGTGGAGCATACAAGTATGCTGACCTTTTCAAAGAAAAACTTGGGGTTAGTCTCGACAAAGAAGATGAAATGGATTGTCTTGTGGCAGGAGCAAACTTCTTGCTTAAGGCAATTCGTCATGAAGCTTTCACACACATGGAGGGCCAGAAAGAGTTTGTTCAAATTGACCCTAATGATTTGTTCCCTTATCTTCTAGTTAATATTGGATCTGGTGTCAGTATGATTAAGGTTGATGGGGATGGGAAATTTGAGAGGGTTAGTGGGACAAATGTTGGTGGTGGTACTTATTGGGGATTGGGAAGACTGTTGACAAAGTGCAAGAGCTTTGATGAGTTGCTTGAGTTGAGCCAGAAAGGAGATAATGGTACTATTGACATGCTTGTTGGGGACATTTATGGTGGTTTGGACTATTCTAAGATTGGCTTATCAGCTTCCACTATTGCTTCAAGTTTTGGAAAAACTATATCAGAAAAAAAGGAGCTTGAAGACTACAGACCTGAAGACATATCACTCTCTCTTCTACGGATGATTTCATATAATATTGGCCAGATAGCTTACTTGAATGCATTGCGATTTCAGTTGAAGCGAATCTTTTTTGGAGGATTTTTTATTAGGGGTCATGCCTATACCATGGATACTATTTCCTTTGCTGTTCAATTCTGGTCTAAGGGCGAAGCACAAGCAATGTTCTTGCGACATGAAGGATTTCTAGGAGCTTTTGGTGCATTTATGAGCTATGAAAAGCACGGATTAGATGACCTCATGGTGCATCAGTTAGTTGAAAGGTTTCCAATGGGTGCTCCATATACCGGAGGCAAGATTCATGGCCCACCGCTTGGAGATTTGAATGAGAAGATTTCATGGATGGAAAAGTTTCTGCAAAAGGGAACTGAGATTACTGCACCTGTGCCAATGACTCCAGTTGCTGGAACTACTGGACTTGGGGGCTTTGAAGTTCCTTTGTCGAAAGGAAGTACTCTGCGATCTGATGCAAGTGCTCTAAATGTTGGTGTTCTCCATCTAGTACCAACTTTGGAGGTGTTTCCATTGTTAACAGACCCAAAATTGTATGAGCCCAATACAATTGATCTTGCAGATCCAAGTGAATTAGAATATTGGTTCACTATTTTGTCAGAGCACTTGCCAGATCTTGTGGACAAGGCTGTTGCAAGTGAAGGTGGAACCGATGATGCCAAAAGAAGAGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACTTGGCAAGGTTGATGGAGGAGCCTGCTGCATATGGGAAGTTAGGCTTGGTCAATCTATTGGAAATGAGGGAAGAGTGCTTGAGAGAATTCCAGTTTGTTGATGCCTATAGAAGTATAAAGCAGAGGGAAAATGAAGCATCACTTGCTGTTTTACCTGACTTGTTGATGGAACTTGATAGTATGGATGAGGAAACAAGGCTGCTTACTCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGACTGGGGATCTCGTGCATGTGTGGATCTTTATCATAAAGGAACTATTATTGAAATTTATAGAATGAGTCGCAATAAAATGCAGAGACCTTGGCGGGTGGATGATTTTGATATCTTCAAAGAGAGAATGTTAGGGACCAGGGACAAGAAAATGCCCCCTCATAGAAGGGCTTTACTTTTCGTTGATAATTCAGGTGCTGACATTGTTCTAGGGATGCTTCCACTGGCAAGGGAGCTCCTCCGTCGTGGAACTGAAGTAGTTCTGGTTGCAAACTCACTTCCTGCTTTAAATGATGTGACTGCAATGGAGCTTCCTGATATTGTAGCTGAAGCTGCTAAGCATTGTGACATTCTAAGGCGAGCTGCTGAAGCTGGAGGCTTGCTCGTGGACGCGATGATTAGTACTTCAGACAGCTCTGAAGAAAATTCATCTTCAGTCCCCTTGATGGTTGTTGAGAATGGGTGTGGTAGCCCATGTATAGACTTAAGACAGGTCAGCTCTGAGCTGGCTGCTGCTGCAAAAGATGCCGATTTGATAATTTTGGAAGGGATGGGTAGAGCTCTTCATACTAACCTCTATGCTCGGTTCAAGTGTGATGCTTTGAAGCTTGCAATGGTGAAAAACCAGAGATTGGCTGAAAAGTTGGTTAAAGGGAACATATACGACTGTATTTGCAAATACGAGCCTGCTGCTAGTTGA 2712 0.4274 MAGLVEEDHQVIGIDKEKETEGGNNTRTHLEERDMAPASGNSIHRSSSRPQLDVSKAEIQGNVGEKYPSILLPNQSDDLIHMALDIGGSLIKLVYFSRHEDKSTDDKRKRSVKERLGLSNGNRRSYPILGGRLHFVKFETRKINECLDFIHSKQLHYGGLESRYSDAVGDQNGIIKATGGGAYKYADLFKEKLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDPNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQKGDNGTIDMLVGDIYGGLDYSKIGLSASTIASSFGKTISEKKELEDYRPEDISLSLLRMISYNIGQIAYLNALRFQLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGAFGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKISWMEKFLQKGTEITAPVPMTPVAGTTGLGGFEVPLSKGSTLRSDASALNVGVLHLVPTLEVFPLLTDPKLYEPNTIDLADPSELEYWFTILSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLVNLLEMREECLREFQFVDAYRSIKQRENEASLAVLPDLLMELDSMDEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDIFKERMLGTRDKKMPPHRRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMISTSDSSEENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGRALHTNLYARFKCDALKLAMVKNQRLAEKLVKGNIYDCICKYEPAAS. 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03068 903 FunFam Pantothenate kinase 2 73 233 - -
Seca4g03068 903 FunFam Pantothenate kinase 2 538 624 - -
Seca4g03068 903 Pfam Fumble 81 423 IPR004567 GO:0004594|GO:0005524|GO:0015937
Seca4g03068 903 SUPERFAMILY Actin-like ATPase domain 192 424 IPR043129 -
Seca4g03068 903 PIRSF PanK_long 35 903 IPR015844 GO:0004594|GO:0015937
Seca4g03068 903 Pfam Damage-control phosphatase ARMT1-like domain 607 888 IPR002791 -
Seca4g03068 903 PANTHER PANTOTHENATE KINASE 51 794 IPR004567 GO:0004594|GO:0005524|GO:0015937
Seca4g03068 903 SUPERFAMILY Actin-like ATPase domain 80 220 IPR043129 -
Seca4g03068 903 Gene3D - 300 414 - -
Seca4g03068 903 MobiDBLite consensus disorder prediction 1 53 - -
Seca4g03068 903 MobiDBLite consensus disorder prediction 9 34 - -
Seca4g03068 903 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 703 901 - -
Seca4g03068 903 FunFam Pantothenate kinase 1 81 219 - -
Seca4g03068 903 Gene3D - 74 233 - -
Seca4g03068 903 Gene3D - 537 624 IPR035073 -
Seca4g03068 903 NCBIfam type II pantothenate kinase 81 424 IPR004567 GO:0004594|GO:0005524|GO:0015937
Seca4g03068 903 FunFam Pantothenate kinase 2 220 405 - -
Seca4g03068 903 SUPERFAMILY AF1104-like 518 900 IPR036075 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03068 Seca-Chr4 52605664 52619269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03068 K24265 - gmx:100781580 1628.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01549 12 16350931 16364409 Seca4g03068 4 52605664 52619269 ECH
Seca4g03068 4 52605664 52619269 Seca4g03068 4 52605664 52619269 ECH
Seca12g01549 12 16350931 16364409 Seca4g03068 4 52605664 52619269 PCT