Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01238 ATGGCTGCTTCTTTAGAAAAGGAACAGCAACGAAACCAAGTTATTGGAATTATCGAAGAAGAGAAATTGCAGAAGCAGGAGAGTAAGGGCAGCAATAAAATCACACGCACGCAAGTGGAGAGCGGCGAAGGGGAAAGAGAGATGACTCCTACGGCTGCCAATTCCATGCACAGGTCTGGTTCGAGGCCTCAACTTGATGTGAGCAAAGCTGAGATTCAAGGGAATGAGGAGGAGAAGTATCCAACCATTTTGTTGCCTAATCAATCTGATGATTTGTCTCACCTAGCACTTGACATTGGAGGATCTCTGATAAAGTTGGTGTACTTTTCAAGACATGAAGACCAATCAGTGGATGATAAAAGGAAGAGAAGTGTAAAAGAGCGACTGGGGTTTTCTAAGGGTAACAGGAGAAGCTACCCTATCCTTGGTGGAAGGCTACACTTTGTGAAGTTTGAAACGAGAAAGATTAATGAGTGCTTGGATTTCATTCATTCAAAGCAGCTTCACTGTGGTGGGTTGGAGCCATGTTACTCTGATGGTGTGACTGACCAGAATGGCATAATTAAGGCTACTGGTGGTGGAGCATACAAGTACGCTGACCTTTTCAAAGAAAGACTTGGGGTTAGTCTTGACAAAGAAGATGAAATGGACTGCCTTGTGGCTGGAGCTAACTTCTTGCTTAAGGCAATTCGTCATGAAGCTTTCACACACATGGAGGGCCAAAAAGAGTTTGTTCAAATTGAACCCAATGATTTATTCCCTTATCTTCTGGTTAATATTGGATCCGGTGTTAGTATGATCAAGGTTGATGGAGATGGGAAATTTGAGAGGATTAGTGGAACAAATGTTGGGGGTGGTACTTATTGGGGCTTGGGAAGACTTTTAACAAAGTGCAAGAGTTTTGATGAGTTGCTTGAGCTGAGTCAGAAAGGAGATAATAGAAGTATGGACATGCTAGTTGGGGATATATATGGGGGTTTGGACTATTCTAAGATTGGCCTATCAGCTTCCACTATTGCCTCAAGTTTTGGCAAAACAATATCAGAAAAAAAGGAGCTTGAAGAATACAGACCTGAAGATATATCACTTTCTCTTCTAAGGATGATTTCGTACAATATTGGTCAGATAGCTTACTTGAATGCATTGCGATTTCGGTTGAAGAGAATCTTTTTTGGTGGATTTTTTATAAGGGGTCATGCCTATACCATGGACACTATTTCTTTTGCTGTACATTTCTGGTCAAATGGAGAAGCACAAGCAATGTTCTTGCGACATGAAGGATTTCTTGGAGCTTTAGGTGCATTTATGAGTTATGAGAAGCATGGTTTAGATGACCTCATGGTTCATCAGTTGGTGGAAAGGTTTCCAATGGGTGCTCCGTATACAGGAGGCAAGATTCATGGCCCACCACTTGGAAATTTGAATGAGAAGGCAAGTGATAGGGATTGGAAATTTCTAATATATGCTGGTGGCTTGATTTCGTGGATGGAGAAGTTTTTGCGGAAGGGAACTGAGATTACTGCACCCGTGCCAATGACTCCACTTGCTGGAACTACTGGACTTGGGGGTTTTGAGGTTCCTTTGTCAAAAGGAAGTACTCTGCGATCTGATGCAAGTGCTCTAAGTGTCGGTGTTCTCCACCTAGTACCAACATTGGAGGTGTTTCCATTACTAGCAGACCCAAAATTGTATGAGCCAAACACAATTGACCTATCTGATAACAATGAACTAGAATATTGGCTCACCATTTTATCAGAGCATTTGTCAGATCTTGTGGACAAGGCAGTAGCAAGTGAAGGTGGAACTGATGATGCAAAGAGAAGGGGTGATGCTTTTGCTCGTGCTTTTTCAGCCCACTTGGCAAGGTTGATGGAGGAGCCTTCCGCATATGGGAAGTTAGGCCTCGCCAACCTCTTGGAAATGAGGGAAGAATGCTTGAGGGAATTCCATTTTGTTGATGCCTACAGAAGTATAAAGCAGAGGGAAAATGAGGCATCGCTTGCTGTTTTACCTGACTTGCTGGTGGAACTTGATAGTATGGATGAGGAATCAAGACTGCTTACACTAATTGAAGGTGTTCTTGCGGCAAACATTTTTGACTGGGGATCTCGTGCATGTGTGGATCTCTATCATAAAGGAACTATTATTGAAATTTACAGAATGAGTCGCAACAAAATGCGTAGACCTTGGCGGGTGGATGATTTTGATGACTTTAAAGAGAGAATGTTAGGGACCAAAAACAACAAAAATACTCGGCACAAGAGAGCTTTACTTTTTGTAGACAACTCAGGTGCTGACATTGTTCTAGGGATGCTTCCTCTAGCTAGGGAACTCCTCCGCCGAGGAACTGAAGTAGTGTTGGTTGCAAACTCTCTTCCTGCTTTAAATGATGTAACTGCAATGGAGCTTCCTGACATCATAGCTGAGGCTGCCAAGCATTGTGACATTCTAAGGCGAGCTGCTGAAGTTGGAGGCTTGCTTGTGGATGCAATGATTAATACTTCAAACAGCTCTATAGAAAATTCATCTTCAGTCCCTTTGATGGTTGTCGAGAATGGGTGTGGCAGTCCATGTATAGACTTAAGACAGGTCAGCTCTGAGCTTGCTGCTGCCGCAAAAGATGCTGATCTGTTAATTTTGGAAGGGATGGGTAGAGCTCTTCATACTAACCTCAATGCTCGGTTTAAGTGTGATGCTTTAAAGGTAAATGATGTGGACTTTGATTTCTGCCTCCACCCATCAATTGCATCCATGTTCCCTATTATGCCCACCATCAGTTACTGGCATTCTTTAAGCATAGTCTCACTTGAGCTTGCGATGGTGAAAAATCAGAGATTGGCTGAAAAATTGGTTAAAGGGGACATATACGACTGTATTTGCAAATACGAACCTGTTAGTTGA 2901 0.4267 MAASLEKEQQRNQVIGIIEEEKLQKQESKGSNKITRTQVESGEGEREMTPTAANSMHRSGSRPQLDVSKAEIQGNEEEKYPTILLPNQSDDLSHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSVKERLGFSKGNRRSYPILGGRLHFVKFETRKINECLDFIHSKQLHCGGLEPCYSDGVTDQNGIIKATGGGAYKYADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIEPNDLFPYLLVNIGSGVSMIKVDGDGKFERISGTNVGGGTYWGLGRLLTKCKSFDELLELSQKGDNRSMDMLVGDIYGGLDYSKIGLSASTIASSFGKTISEKKELEEYRPEDISLSLLRMISYNIGQIAYLNALRFRLKRIFFGGFFIRGHAYTMDTISFAVHFWSNGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGNLNEKASDRDWKFLIYAGGLISWMEKFLRKGTEITAPVPMTPLAGTTGLGGFEVPLSKGSTLRSDASALSVGVLHLVPTLEVFPLLADPKLYEPNTIDLSDNNELEYWLTILSEHLSDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPSAYGKLGLANLLEMREECLREFHFVDAYRSIKQRENEASLAVLPDLLVELDSMDEESRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMRRPWRVDDFDDFKERMLGTKNNKNTRHKRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIIAEAAKHCDILRRAAEVGGLLVDAMINTSNSSIENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLLILEGMGRALHTNLNARFKCDALKVNDVDFDFCLHPSIASMFPIMPTISYWHSLSIVSLELAMVKNQRLAEKLVKGDIYDCICKYEPVS 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01238 966 SUPERFAMILY Actin-like ATPase domain 93 233 IPR043129 -
Vimu10g01238 966 Gene3D - 315 427 - -
Vimu10g01238 966 MobiDBLite consensus disorder prediction 13 29 - -
Vimu10g01238 966 FunFam Pantothenate kinase 2 233 418 - -
Vimu10g01238 966 FunFam Pantothenate kinase 2 566 652 - -
Vimu10g01238 966 FunFam Pantothenate kinase 2 86 246 - -
Vimu10g01238 966 PANTHER PANTOTHENATE KINASE 63 820 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vimu10g01238 966 MobiDBLite consensus disorder prediction 52 67 - -
Vimu10g01238 966 Gene3D - 86 246 - -
Vimu10g01238 966 Pfam Damage-control phosphatase ARMT1-like domain 637 898 IPR002791 -
Vimu10g01238 966 NCBIfam type II pantothenate kinase 94 437 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vimu10g01238 966 SUPERFAMILY Actin-like ATPase domain 205 438 IPR043129 -
Vimu10g01238 966 PIRSF PanK_long 48 922 IPR015844 GO:0004594|GO:0015937
Vimu10g01238 966 PIRSF PanK_long 924 966 IPR015844 GO:0004594|GO:0015937
Vimu10g01238 966 Gene3D - 567 652 IPR035073 -
Vimu10g01238 966 SUPERFAMILY AF1104-like 546 964 IPR036075 -
Vimu10g01238 966 Pfam Fumble 94 436 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vimu10g01238 966 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 731 905 - -
Vimu10g01238 966 FunFam Pantothenate kinase 1 94 232 - -
Vimu10g01238 966 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01238 Vimu-Chr10 12380581 12398896 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01238 K24265 - gmx:100781580 1612.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00666 7 6655214 6669927 Vimu10g01238 10 12380581 12398896 ECH
Vimu10g01238 10 12380581 12398896 Vimu10g01238 10 12380581 12398896 ECH
Vimu7g00666 7 6655214 6669927 Vimu10g01238 10 12380581 12398896 PCT