Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1587 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1588 Acco02g3421 . Accr2g00488 . Adu09g03175 . . . . . . . . . Alju01g3414 . . . . . Arst9g04254 . . . Bisa03g2900 . . . Car04g01031 . . . Dere01g0451 . . . Enph2g2440 . Glsi12g0933 . Gma10g02061 Gma20g01653 . . Gso10g1929 Gso10g1929 . . . . . . Lal2g1032 . . . . . . . Lapu7g01864 . Lasa6g03823 . Lele05g2536 Lele06g2515 Lele07g2549 Lele08g2451 . . . . Lja5g0834 Lja2g2866 Mal1g2890 . Mepo4g04041 . Mesa1g04381 . Mibi02g3121 . Mtr1g3538 . . . Phco6g02244 . Prci1g0505 . . . Pste4g02226 . . . . . . . Pvu7g0929 . Rops6g02487 . Seca10g03460 . Spst10g00732 . . . . Sto8g2337 Tpr1g0963 . Trre1g05079 . Tsu01g04189 . Vian3g00811 . Vifa3g02646 . Vimu3g02811 . Viun7g02977 . Vivi1g04680 . . .
Vvi18g1589 Acco02g3420 . Accr2g00489 . Adu09g03174 . . . . . . . . . Alju01g3413 . . . . . Arst9g04253 . . . Bisa03g2901 . . . Car04g01032 . . . Dere01g0452 . . . Enph2g2439 . Glsi12g0934 . . Gma20g01652 . . . . . . . Lal12g0131 . . . Lal9g0910 . . . . . . Lapu7g01865 . Lasa6g03825 . Lele05g2534 Lele06g2514 Lele07g2548 Lele08g2450 . . . . Lja5g0833 Lja2g2867 Mal1g2891 . Mepo4g04043 . Mesa1g04382 . Mibi02g3120 . Mtr1g3539 . . . Phco6g02245 . Prci1g0507 . . . Pste4g02228 . . . . . Pumo3g01240 . Pvu7g0928 . Rops6g02488 . Seca8g07151 . Spst10g00733 . . . . . Tpr1g0962 . Trre1g05080 . Tsu01g04190 . Vian3g00810 . Vifa3g02647 . Vimu3g02812 . Viun7g02979 . Vivi1g04678 . . .
Vvi18g1590 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1591 . . . . Adu09g03173 . . . . . . . . . . . . . . . Arst9g04252 . . . . . . . Car04g01033 . . . . . . . . . . . Gma10g02062 Gma20g01651 . . Gso10g1931 Gso10g1931 . . . . . . . Lal9g0911 . . . . . . Lapu7g01866 . Lasa6g03826 . . . . . . . . . Lja5g0832 . Mal1g2892 . Mepo4g04044 . Mesa1g04383 . . . Mtr1g3540 . . . Phco6g02246 . . . . . Pste4g02231 . . . . . Pumo3g01239 . Pvu7g0927 . Rops6g02489 . Seca8g07152 . Spst10g00735 . . . . . Tpr1g0957 . Trre1g05083 . Tsu01g04191 . Vian3g00809 . Vifa3g02649 . Vimu3g02813 . Viun7g02981 . Vivi1g04676 . . .
Vvi18g1592 . . . . . . Aed7g0874 . . . . . . . . . . . . . . . . . . . . . . . Cca08g00998 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu9g0266 . . . . . . . . . . . . . . . . . . . . .
Vvi18g1593 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01035 . . . . . . . . . . . . . . . . . . . . . . . . Lal9g0912 . . . . . . . . . . . . . . . . . . Lja5g0830 . Mal1g2894 . . . . . . . Mtr1g3542 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g0955 . . . Tsu01g04194 . . . . . . . . . . . . .
Vvi18g1594 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal2g1033 . . . . . . . . . . . . . . . . . . . . Lja2g2868 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1595 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01037 . Cca08g00948 . . . . . . . . . . . . . . . . . . . . . . Lal9g0914 . . . . . . . . . . . . . . . . . . Lja5g0828 . Mal1g2899 . . . . . . . Mtr1g3543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto8g2343 Tpr1g0953 . . . Tsu01g04197 . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g1586 Chr18 20160953 20168322 +
Vvi Vvi18g1587 Chr18 20173213 20174829 -
Vvi Vvi18g1588 Chr18 20203322 20206581 +
Acco Acco02g3421 Chr02 48076701 48081350 -
Accr Accr2g00488 Chr2 10874798 10879484 +
Adu Adu09g03175 Chr09 119641649 119645763 -
Alju Alju01g3414 Chr01 62447338 62452312 -
Arst Arst9g04254 Chr9 117525511 117529590 -
Bisa Bisa03g2900 Chr03 46826635 46831713 +
Car Car04g01031 Chr04 10479585 10483449 +
Dere Dere01g0451 Chr01 10065082 10072200 +
Enph Enph2g2440 Chr2 40695501 40700314 -
Glsi Glsi12g0933 Chr12 27055323 27059467 +
Gma Gma10g02061 Chr10 48136162 48141215 +
Gma Gma20g01653 Chr20 43629451 43633478 -
Gso Gso10g1929 Chr10 46262758 46268110 +
Gso Gso10g1929 Chr10 46262758 46268110 +
Lal Lal2g1032 Chr2 7083481 7088801 +
Lapu Lapu7g01864 Chr7 34645102 34649652 +
Lasa Lasa6g03823 Chr6 596478468 596483318 +
Lele Lele05g2536 Chr05 41124113 41125886 -
Lele Lele06g2515 Chr06 32937715 32941924 -
Lele Lele07g2549 Chr07 30884792 30888764 -
Lele Lele08g2451 Chr08 30234816 30239272 -
Lja Lja5g0834 Chr5 7926111 7930104 -
Lja Lja2g2866 Chr2 47007854 47013757 +
Mal Mal1g2890 Chr1 41332098 41336565 +
Mepo Mepo4g04041 Chr4 50003490 50008302 +
Mesa Mesa1g04381 Chr1 69266166 69270765 +
Mibi Mibi02g3121 Chr02 55752377 55757453 -
Mtr Mtr1g3538 Chr1 46956409 46961259 +
Phco Phco6g02244 Chr6 43624659 43628942 +
Prci Prci1g0505 Chr1 4771590 4776654 +
Pste Pste4g02226 Chr4 16136959 16141227 +
Pvu Pvu7g0929 Chr7 9171706 9176160 -
Rops Rops6g02487 Chr6 45260962 45264974 +
Seca Seca10g03460 Chr10 60358027 60362253 +
Spst Spst10g00732 Chr10 7713520 7714036 +
Sto Sto8g2337 Chr8 15725780 15732069 -
Tpr Tpr1g0963 Chr1 8324502 8329095 -
Trre Trre1g05079 Chr1 57032106 57036347 +
Tsu Tsu01g04189 Chr01 49780406 49784679 +
Vian Vian3g00811 Chr3 8517094 8518152 -
Vifa Vifa3g02646 Chr3 729816875 729821475 +
Vimu Vimu3g02811 Chr3 42360746 42365530 +
Viun Viun7g02977 Chr7 32792068 32796954 +
Vivi Vivi1g04680 Chr1 100043281 100047349 -
Vvi Vvi18g1589 Chr18 20208214 20209797 -
Acco Acco02g3420 Chr02 48074302 48075849 +
Accr Accr2g00489 Chr2 10880473 10882020 -
Adu Adu09g03174 Chr09 119638357 119641049 +
Alju Alju01g3413 Chr01 62444798 62446342 +
Arst Arst9g04253 Chr9 117522229 117524874 +
Bisa Bisa03g2901 Chr03 46831761 46833248 -
Car Car04g01032 Chr04 10483971 10486771 -
Dere Dere01g0452 Chr01 10072784 10074367 -
Enph Enph2g2439 Chr2 40693515 40695008 +
Glsi Glsi12g0934 Chr12 27060517 27062025 -
Gma Gma20g01652 Chr20 43624522 43627687 +
Lal Lal12g0131 Chr12 908834 910369 -
Lal Lal9g0910 Chr9 6855131 6857617 -
Lapu Lapu7g01865 Chr7 34649720 34653078 -
Lasa Lasa6g03825 Chr6 596698930 596700441 -
Lele Lele05g2534 Chr05 41109121 41110647 +
Lele Lele06g2514 Chr06 32935415 32936932 +
Lele Lele07g2548 Chr07 30878112 30879662 +
Lele Lele08g2450 Chr08 30232386 30233912 +
Lja Lja5g0833 Chr5 7921843 7924401 +
Lja Lja2g2867 Chr2 47014683 47016990 -
Mal Mal1g2891 Chr1 41340473 41341978 -
Mepo Mepo4g04043 Chr4 50020927 50023719 -
Mesa Mesa1g04382 Chr1 69273857 69275353 -
Mibi Mibi02g3120 Chr02 55750166 55751707 +
Mtr Mtr1g3539 Chr1 46962949 46965669 -
Phco Phco6g02245 Chr6 43629851 43631386 -
Prci Prci1g0507 Chr1 4777048 4779623 -
Pste Pste4g02228 Chr4 16142699 16144646 -
Pumo Pumo3g01240 Chr3 19977627 19980333 +
Pvu Pvu7g0928 Chr7 9161700 9164821 +
Rops Rops6g02488 Chr6 45265649 45268410 -
Seca Seca8g07151 Chr8 167739780 167742386 -
Spst Spst10g00733 Chr10 7715015 7716544 -
Tpr Tpr1g0962 Chr1 8320671 8323438 +
Trre Trre1g05080 Chr1 57037868 57039376 -
Tsu Tsu01g04190 Chr01 49786042 49788717 -
Vian Vian3g00810 Chr3 8513933 8515429 +
Vifa Vifa3g02647 Chr3 729825675 729827183 -
Vimu Vimu3g02812 Chr3 42366168 42367661 -
Viun Viun7g02979 Chr7 32797554 32800409 -
Vivi Vivi1g04678 Chr1 99967106 99969650 -
Vvi Vvi18g1590 Chr18 20210427 20210682 -
Vvi Vvi18g1591 Chr18 20224593 20231249 -
Adu Adu09g03173 Chr09 119620148 119622948 +
Arst Arst9g04252 Chr9 117504160 117507085 +
Car Car04g01033 Chr04 10496780 10500425 -
Gma Gma10g02062 Chr10 48143622 48152098 -
Gma Gma20g01651 Chr20 43618681 43622412 +
Gso Gso10g1931 Chr10 46273826 46278052 -
Gso Gso10g1931 Chr10 46273826 46278052 -
Lal Lal9g0911 Chr9 6864606 6870315 -
Lapu Lapu7g01866 Chr7 34655514 34659226 -
Lasa Lasa6g03826 Chr6 596935436 596938036 -
Lja Lja5g0832 Chr5 7905134 7909860 +
Mal Mal1g2892 Chr1 41374516 41378026 -
Mepo Mepo4g04044 Chr4 50037584 50041282 -
Mesa Mesa1g04383 Chr1 69287242 69290408 -
Mtr Mtr1g3540 Chr1 46977177 46980830 -
Phco Phco6g02246 Chr6 43635972 43639453 -
Pste Pste4g02231 Chr4 16149376 16153859 -
Pumo Pumo3g01239 Chr3 19970517 19974467 +
Pvu Pvu7g0927 Chr7 9155581 9159395 +
Rops Rops6g02489 Chr6 45272127 45276272 -
Seca Seca8g07152 Chr8 167745887 167749896 -
Spst Spst10g00735 Chr10 7719863 7723477 -
Tpr Tpr1g0957 Chr1 8264111 8268615 +
Trre Trre1g05083 Chr1 57067418 57070768 -
Tsu Tsu01g04191 Chr01 49799351 49803038 -
Vian Vian3g00809 Chr3 8506773 8510212 +
Vifa Vifa3g02649 Chr3 731601826 731604849 -
Vimu Vimu3g02813 Chr3 42382850 42391770 -
Viun Viun7g02981 Chr7 32801342 32805131 -
Vivi Vivi1g04676 Chr1 99958850 99961202 +
Vvi Vvi18g1592 Chr18 20255414 20261452 +
Aed Aed7g0874 Chr7 6597819 6601932 -
Cca Cca08g00998 Chr08 24157431 24159689 +
Ssu Ssu9g0266 Chr9 13817802 13820653 -
Vvi Vvi18g1593 Chr18 20264229 20266148 +
Car Car04g01035 Chr04 10506936 10510776 -
Lal Lal9g0912 Chr9 6872480 6876440 -
Lja Lja5g0830 Chr5 7894185 7898125 +
Mal Mal1g2894 Chr1 41386081 41389304 -
Mtr Mtr1g3542 Chr1 46988570 46996647 -
Tpr Tpr1g0955 Chr1 8253755 8257408 +
Tsu Tsu01g04194 Chr01 49811225 49814955 -
Vvi Vvi18g1594 Chr18 20277267 20299113 -
Lal Lal2g1033 Chr2 7089107 7098484 -
Lja Lja2g2868 Chr2 47023874 47043378 -
Vvi Vvi18g1595 Chr18 20311712 20314654 +
Car Car04g01037 Chr04 10524033 10526865 +
Cca Cca08g00948 Chr08 22413290 22419835 +
Lal Lal9g0914 Chr9 6884377 6887308 -
Lja Lja5g0828 Chr5 7874212 7875652 -
Mal Mal1g2899 Chr1 41471827 41473959 +
Mtr Mtr1g3543 Chr1 47019753 47021655 +
Sto Sto8g2343 Chr8 15789654 15791643 -
Tpr Tpr1g0953 Chr1 8229570 8231931 -
Tsu Tsu01g04197 Chr01 49829677 49831860 +