Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1592 ATGGAGCAAAGATTAGCCAGTACATTTCGAATGACCGTGAATGAGAAGAAATTCATTGAAAAAGCATTGCTTTCCGACCTCAGAATCGATGGTCGTCGCCCTTTTGATTTTCGCCGCATAAGCATCAAGTTTGGTAGAGAAGATGGGTCGTCAGAGGTGCAGTTAGGTCAAACTCATGTGATGGGGTTTGTTACTGGGCAACTTATTCAGCCTTATAGGGATAGACCTAATGAGGGGACGCTTTCAATTTATACTGAATTCTCTCCCATGGCTGATCCTTCTTTTGAGGCTGGACGTCCCGGAGAAGCTGCAGTGGAGTTGGGACGGGTAATAGACCGCGGTTTAAGGGAAAGCAGGGCAGTGGATATGGAATCACTTTGTGTTCTTGCTGGCAAGTTGGTATGGTCTATCCGAATTGATCTCCACATTATTGATAATGGGGGAAATCTTATTGATGCCGCTAATATTGCTGCTTTGGCTGCTCTGTTGACATTTCGAAGGCCTGAATGTTCATTCGGAGGGGAAGATGGTCAGGAACTGATAGTACATCCACCTGAGGTGAGGGAGCCACTTCCTTTGATTGTACATCATCTCCCAATAGCAGTGACCTTTGCAATTATTGGGAATGAGAACATTATGGTGATAGATCCAACCCACAGTGAAGAGGCTGTTATGGGTGGAAGAATGACTGCTACACTTAATACAAATGGTGATGTCTGTGCTATTCAAAAAGCTGGAGGAGAGGGTATCATTCAGAGTGTTATCATGCAGTGCTTGCGAATTGCTTCAGTGAAGGCTGCTGATATAACAAGCAAGATAAAAAATGCAGTTGAAGCATTCAACACAGAAAGAGCATTGCGGAAGATCAAGCGCCACTCTTCTTCCATAGCTGTGGATGTTAGTGGACCAGGTGCTAAAATGAGGGAGAACAAAAATCAATCTGTTGATGAGAAGGTAGTCAATGAGTTATCAAGCCATCACATGGAGAGGTTGAAGATGGAATCAGAAGAAAGCTGTGTCACTCAGAGCAGTGATGTGGAAGTTAAAACCCAATTATCTGAACAAGGAAGAACTAACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTGGGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATGGATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGGCCCCTGACGTAAAGTCAGAGGAACCAAATGCTGATATTGATCCAGCTCTTTGTCCAATGAAAACTGTTGGAACCACACCCCAAACAAATGGAGAGAAGACATTGAAGGATGCAGTAAAGCCTAAGAACAAGAGAAAGAAGAAGGCATCCCCCAACACTAATGCAAGGTAG 1404 0.4373 MEQRLASTFRMTVNEKKFIEKALLSDLRIDGRRPFDFRRISIKFGREDGSSEVQLGQTHVMGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEAAVELGRVIDRGLRESRAVDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQELIVHPPEVREPLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVCAIQKAGGEGIIQSVIMQCLRIASVKAADITSKIKNAVEAFNTERALRKIKRHSSSIAVDVSGPGAKMRENKNQSVDEKVVNELSSHHMERLKMESEESCVTQSSDVEVKTQLSEQGRTNRSDENTRSFIGGPSSWDPYSKGIDSDFLKASLASHGLIKQNTKQKDSRGEMKAPDVKSEEPNADIDPALCPMKTVGTTPQTNGEKTLKDAVKPKNKRKKKASPNTNAR* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1592 467 MobiDBLite consensus disorder prediction 451 467 - -
Vvi18g1592 467 MobiDBLite consensus disorder prediction 337 372 - -
Vvi18g1592 467 FunFam Exosome complex component RRP45B 6 294 - -
Vvi18g1592 467 Gene3D - 6 337 IPR027408 -
Vvi18g1592 467 MobiDBLite consensus disorder prediction 400 421 - -
Vvi18g1592 467 PANTHER EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN 11 278 - -
Vvi18g1592 467 CDD RNase_PH_RRP45 11 271 IPR033100 GO:0000178|GO:0006396
Vvi18g1592 467 SUPERFAMILY Ribosomal protein S5 domain 2-like 11 223 IPR020568 -
Vvi18g1592 467 Pfam 3' exoribonuclease family, domain 1 36 168 IPR001247 -
Vvi18g1592 467 SUPERFAMILY Ribonuclease PH domain 2-like 193 294 IPR036345 -
Vvi18g1592 467 MobiDBLite consensus disorder prediction 334 375 - -
Vvi18g1592 467 MobiDBLite consensus disorder prediction 397 467 - -
Vvi18g1592 467 Pfam 3' exoribonuclease family, domain 2 197 263 IPR015847 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1592 K03678 - vvi:100265860 890.952