Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1587 ATGGGGCAAGCCTCTTCTTCTTGCACGGCTCTTGCTTCTGCTGAAATTTCGGTGAAGGTGGAGGTGGGCAGCGGCAGCAGCAGGTGGCGTGGTGTTGGTGGTGATGGTGATGGTGACCTCACATTGGGGTTGCCGGACGAGTGCCTGGCGGGGGTGTTTGGGAAGCTGGGCTGTCATGACCGAAACACGTGCTCGCTGGTGTGCAGGAGGTGGAGGGCGGTGGATTCCAAATCGAGGCAGCGGCTGGTTCTGCTTGCTCGCTCCGACGTGTCGCCGTTCCTCCCGGCGCTGCTTTGTCGGTTCAGTTCCGTTTCGGTTCTGTCTTTGAAATGTTCTCGGAAGATTGTGAGCATCGACGACCTGGCGCTGTCTCGAATCCCGACGCTCTTGGCTTCGCTCAAGAAGCTGAAACTCAAGGGCTGCATCGACGTCACCGACGAAGGCCTCCACGCCTTCTCCCTCCACCGCCCTCTTCTCCTCACGAAGCTCTCGTTCGCCTCCTGCGGATTCGGCGCCGGTGGTCTCATTTCTCTCATCTCCAACTGCCCTTCTCTTCAAGATCTCACCCTCAAGCGCCTCCGCAAGCTGGACGCCCAGAATGTGCCCTTGTCCTTCGACCACCCCCACCGCCTGGAGCGCCTTTGCATCAAGGATCTTCACAATGCTCGCCTCTTCATCCCTCTCCTCGCCGCCTCCAAGACTCTCAAAGCCCTGGTGGTCTGCCGGAGCTCCGGCAACTGGGACCCACTTCTTGAGAGCCTCCAACGAGGAGGAGCCACTAGTGTCTCCGAGATTCAGATGGAGAATGTCCAAATGGGCGACCCAGGCCTCGTCGCCATCTCCGCCTCCTGCCCCGACCTCGAAGTTCTATACCTGAGCAGGGCTTCCGACTGTACGGACGATGGTGTGTCCGCCATTGCCAACTCCTGCAGGAAGCTCAGAAAGCTGCATATCGACGCGTGGAGCAGGTTCGGAAGCAGGACGATCGGGGACGATGGAGTGTTGTCCATTGCAACAAGATGCTCAAACCTCCAAGAGGTGGTTCTAATGGGGATCCCGGTGACCGTTGGCTCCTTCAATATGTTTGCTTCCAACTGCCCAGTACTAGAGCGGATGGCAATCTGCAATACCGACACAGTGGGGGACTCAGAGCTGGCAGTCATCGCTTCCAAATTCACAGCCTTGAAGAAGCTCTGCATCAAGAACTGCCCCATCTCCGACACGGGAGTTAAAGCCGTCGGTGAAGGATGCCCCAGCCTGGTGAAGTTGAAGGTGAAGAGGTGCAGGGGGGTGACACAGGTAAGCGTATCCCAATTGAGACTGCAGAGGGGTTCGGTGGTGGTTTCAGTTGATGCAGGATCAATGATATTTGAGGAAGGGATGGCGATGGCAGAGGAAGAAACAGGGACAGCCGGAGGAGGAGGAGGAGGTGGTGGTGGAGTAGAAGGGGGTGGAGGGGAGAGAACTCGTGGGGGACGAATCAGCAGGAGGAGGAGCACAAGCACAAGCACGAATGTGGTATGCAGCAGCAGAGGGGCACTCTTACTCAGGTCTAAATTTGAGAATGCTCTGCAGCTCAGTAGGAGGAGCTCCTCTTCAATTCATGCTCCCAGATGA 1617 0.5745 MGQASSSCTALASAEISVKVEVGSGSSRWRGVGGDGDGDLTLGLPDECLAGVFGKLGCHDRNTCSLVCRRWRAVDSKSRQRLVLLARSDVSPFLPALLCRFSSVSVLSLKCSRKIVSIDDLALSRIPTLLASLKKLKLKGCIDVTDEGLHAFSLHRPLLLTKLSFASCGFGAGGLISLISNCPSLQDLTLKRLRKLDAQNVPLSFDHPHRLERLCIKDLHNARLFIPLLAASKTLKALVVCRSSGNWDPLLESLQRGGATSVSEIQMENVQMGDPGLVAISASCPDLEVLYLSRASDCTDDGVSAIANSCRKLRKLHIDAWSRFGSRTIGDDGVLSIATRCSNLQEVVLMGIPVTVGSFNMFASNCPVLERMAICNTDTVGDSELAVIASKFTALKKLCIKNCPISDTGVKAVGEGCPSLVKLKVKRCRGVTQVSVSQLRLQRGSVVVSVDAGSMIFEEGMAMAEEETGTAGGGGGGGGGVEGGGGERTRGGRISRRRSTSTSTNVVCSSRGALLLRSKFENALQLSRRSSSSIHAPR* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1587 538 Gene3D Ribonuclease Inhibitor 76 452 IPR032675 -
Vvi18g1587 538 SMART LRR_CC_2 392 416 IPR006553 -
Vvi18g1587 538 SMART LRR_CC_2 130 155 IPR006553 -
Vvi18g1587 538 SMART LRR_CC_2 310 340 IPR006553 -
Vvi18g1587 538 SMART LRR_CC_2 284 309 IPR006553 -
Vvi18g1587 538 SMART LRR_CC_2 417 443 IPR006553 -
Vvi18g1587 538 FunFam F-box protein SKIP2 76 460 - -
Vvi18g1587 538 CDD F-box_AtTIR1-like 45 79 - -
Vvi18g1587 538 SUPERFAMILY F-box domain 33 74 IPR036047 GO:0005515
Vvi18g1587 538 Pfam F-box domain 43 73 IPR001810 GO:0005515
Vvi18g1587 538 SUPERFAMILY RNI-like 62 432 - -
Vvi18g1587 538 Gene3D - 40 75 - -
Vvi18g1587 538 MobiDBLite consensus disorder prediction 467 507 - -
Vvi18g1587 538 SMART fbox_2 44 82 IPR001810 GO:0005515
Vvi18g1587 538 FunFam F-box/LRR-repeat protein 4 41 79 - -
Vvi18g1587 538 PANTHER UNCHARACTERIZED 44 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1587 Vvi-Chr18 20173213 20174829 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1587 - - vvi:100852716 921.383