Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05083 ATGAAGATGGGTGGTTCCACCTTCACTCATTTCTCATATTCTTCTCCTTCTCTTTCATCTCTCTTTCTTCCATCCAAATCCACTTTTCAACCTCTTCCTTCCACCCTTATCTCTAACCCTTTCCCTTCCAAACTTGCCACTTCATCACCATGCTCTCTTAAAAAGATTAAAGCTTTTGGAATTCAGCAAACAGGTTCCACTCCACATGGTGACAACAACCTTGATGCATTCAAGAGTAGGATTGTGCTCCAGAAGTTTCAAAGGGCAATGCCAATGGAACCCCTTATAACCATTTTCACAAAACAATCTGAGATGAATGACTTCACAATGGAAAATATTCAAGATTGGAGAAAGTCATCCAAATGGGTTTTGGCATTCTTGTTTGGACAAACTATATCAGTTATTTCTCCTGATGTTTCATACGCAAGTGACTCGGTGAAGATAAATGAGATGTATCAAGTTGGGGAGCTTTTTGACTTAGGAATCCAACTAATATATTTGCTACTGTTGTTGGGTTTGCTTGGGGCTGGAACTTACTATGTGATTCGCCAAGTTCTTGTCCGCAGAGAACTTGACCTTTCTGCCAAAGAGTTGCAGGAGCAAGTCAGAAGCGGTGATGCAAGTGCGACTGAGCTGTTTGAACTTGGTGCAGTGATGCTACGGAGGAAATTTTACCCGGCTGCTACCAAGTTCTTGATTCAAGCAATTGAGAAATGGGATGGAGAAGATCAGGATCTTGCCCAGGTTCACAATGCCCTCGGTGTCAGCTATGTTCGCGATGGGAAGATTGAAAAAGGAATTGCTCAGTTTGAGACAGCTGTGAAGATTCAACCAGGCTATGTCACAGCATGGAACAATCTTGGCGATGCTTATGATAGCAAAAAAGAATTTGTGGCTGCTCTAAAGGCATTTGAAGAAGTCCTTCTATTCGATCCTAACAACAAGATTGCGCGGCCCAGAAGAGATGCTTTGAAGGAACTTGTTGGAATGTCCCAAGGAGTTACTGTCAAGTATAGAGAGAAGAAATGA 1029 0.4227 MKMGGSTFTHFSYSSPSLSSLFLPSKSTFQPLPSTLISNPFPSKLATSSPCSLKKIKAFGIQQTGSTPHGDNNLDAFKSRIVLQKFQRAMPMEPLITIFTKQSEMNDFTMENIQDWRKSSKWVLAFLFGQTISVISPDVSYASDSVKINEMYQVGELFDLGIQLIYLLLLLGLLGAGTYYVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVMLRRKFYPAATKFLIQAIEKWDGEDQDLAQVHNALGVSYVRDGKIEKGIAQFETAVKIQPGYVTAWNNLGDAYDSKKEFVAALKAFEEVLLFDPNNKIARPRRDALKELVGMSQGVTVKYREKK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05083 342 ProSiteProfiles TPR repeat profile. 247 280 IPR019734 GO:0005515
Trre1g05083 342 SMART tpr_5 247 280 IPR019734 GO:0005515
Trre1g05083 342 SMART tpr_5 281 314 IPR019734 GO:0005515
Trre1g05083 342 Gene3D Tetratricopeptide repeat domain 179 333 IPR011990 GO:0005515
Trre1g05083 342 ProSiteProfiles TPR repeat profile. 281 314 IPR019734 GO:0005515
Trre1g05083 342 SUPERFAMILY TPR-like 206 319 IPR011990 GO:0005515
Trre1g05083 342 Pfam Tetratricopeptide repeat 252 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05083 Trre-Chr1 57067418 57070768 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05083 - - psat:127098590 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05083 1 57067418 57070768 Trre1g05083 1 57067418 57070768 ECH