Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1588 ATGATCACCATGGCTGATGAAAATGAGAAGAAAATCCCTGTATTCACAGTCCTGAAGAACAACGCCATTCTCAAGAACATCTTCGTGATCGACCAACCACCGCCGGGGATCTCCGAACCGGAAAGACCAGAGCACGTATTGGAAGAGATCTTGATGGTTGGAAGACACCCAGATTGCAACATCATGTTGACACATCCAAGCATCAGCAGATTCCACCTTCAAATATATTCAAACCCCACGTTGCAGAAGCTCTCTGTGATGGATTTATCATCTGTACATGGGACTTGGGTTTCGGAGAAGAAGATCCAACCGCGTGCTCGAGTTGAACTTAAAGAGGGCGATATAATAAGGTTGGGCAGCTCTAGCAGGATCTATAGGCTGCATTGGGTTCCTTTGAGCCAGGCCTATGATTTAGAAAACCCATTTGTGTCAGCGTCCGATGTGTTGATGGAAGAAGAGAAAGAAGATGAAATTTATCAGGATGTGAGTTCATTTTCTGTTGACAGTAAGGAAATTCAATCACAGCATCCAGTTCTGAAGGGCATGGAATCTGTCTTTTCTGATGAGAATTGTGAACCATTTGTGGAGAAACCAATTCCATCTGCACCTCCAGAGCCGGAAAACATGAATTCTTCAGCTTCTGATGAAGAAAAAACAGAAGGAGAAGGTCTTCCAGTAGTTGAGGCATTTGAAGAGATAGAAAATCAAAGTCCATCAAGAAGAGATTATGAACAGACGGAGATACTGGGTGCTGTGAATTTGTTGCCTTCTGCAGAGGTTCTCTTGGAGACAAGAAATGAACAATTGGATGAAGAAATCAAGAGCCCACAACCTCTTTTTGTCTCAGAGGTATTTTCTCAAGGAGAAACTCCAGTGGGTCTCCCAACAAAATCCTGGCAAAAATCTAAGTTGCTTGGAAGTCTGGATTCGTATGTTGCTGATGATAAAATAGAAATCCCATTGGTAGCTGAAGTTCTTGAAGAAGTGGAAAACCAGAGCCCTCCAAGAAAAGGCTATGAACAGAGAGAAGCCTCAGGCCTCCACTCCGGAGCTATCACAACTGAATCTGTCAATTCGTCTGTCCCAGACAGGAATATTCTCTCTGATATTGGGAATCAACAATTTTCCAATGAAAACCAGCCCCCTAAACCTCTTCCTGTGACCCTTGGACTGTCTGATGATGAAAATCCAGAAAGTCCTCCAGTAAGATTGGAGCAAAAATCTAGTTTACCTAACATATGGTCAAGAAGAGGTAAGCCTGCTAGTGTTCTTCAGATTCAAACAGGCAGGAGCACAAGAAAGTGCATTGGTGATGGTAATGGTGCTAAAATTAGAAAGCCAAAGCAGGAGGATTTGGAAAATAAACCAATTTCAAGGGCTCTTTTCCCTATGTTAGATGGGGAAGAGACAGAAATTTTTACTCCTAACAAAGAGAATTTTTCACCAAATACCCTTCTGCTGAAGTCTGTGAATAAGAAGAAGGGCATTCTAGAAGAAACTAAACAGTCCACATTGTGCAGATCATCATCTTCAAAGTTTTCCACTGGCCCCAACAAATGTTCAGAAGAAGATACGTCCACCTTTTCAGACAAAGAGAATCAGACACCTCAAGTTCTCCAAACACGAAAATCAGTAAGGCCCTCACCTGAAAATAGCTCTAGAAATCGTGGAAAGTTGGAAAAGGAGATTATGGTAATGAAGAGAGGAGCAGAAAGGGTACCATTTCATTCTCTGCTTGAGAATGCTGCTTGCAAAAGCAAGTCAGAAGTTTCAATCCTTGGTGCTAAAACTAGAAGCAGCAATTCTGTCAACTGTACTGGAACCACAGGGAATGCCACCAACTCTTCTTTTAACAATTCTGCTGGAGAGGGAAAGAGAAGGTGGAACATGGTAGTGGACGCTACTTGCCTTCTGAACAAAGAGTCAAGGAAGTCATTACAGCTTTTACAAGGTCTCAAGGGAACTCAACTAATCATTCCAAGAATGGTCATTAGGGAGCTGGATTGCCTGAAGCGACGAGGTAGTTTGTTTAGAAGAATATCAGAAGTTTCTTTGGTGTTGCAATGGATTGAGGAATGTATGGTGAAAACAAAGTGGTGGATCCACGTTCAGAGCTCTATAGAGGAAGGAAGGCCCATCGCACCAACCCCTCCTGCTTCTCCTCCTCGATTCAGTGAAGGAAGTGGGGGATTCATCAGTGGGACGACAAGCTCAGTGCCATTTTCTGCCTGCGGGAGTTTAATGGAAATAGTTTCGCCAACTGCAGAAGACCATATCCTTGAATGTGCTCTTTTCTTCAGGAGAATAAAGAATGATGGACAGCTTGTCCTTTTTACCAATGATGTCACTCTGAAGATCAAAGCCATGGCAGAAGGTTTGAATTGTGAGACAGTAGAGGAATTCCGTGAGAGTCTGGTGAACCCCTTTTCTGAGAGGTTCATGTGGTCTGACAGCTCTCCCAGAGGACAGACTTGGTCCTACTTAGATGATGTAGTTCTAAGGGAGAAATATTACCGCTGCCCTCTGAAGAAGGCATCAAAGGGAGGAGAAAGTGCAAAGGGTTTGAAGCTGATACTCCTCCACAATTCTCATTATGGGAAGATCGGTTCAATCAGCTAA 2619 0.4326 MITMADENEKKIPVFTVLKNNAILKNIFVIDQPPPGISEPERPEHVLEEILMVGRHPDCNIMLTHPSISRFHLQIYSNPTLQKLSVMDLSSVHGTWVSEKKIQPRARVELKEGDIIRLGSSSRIYRLHWVPLSQAYDLENPFVSASDVLMEEEKEDEIYQDVSSFSVDSKEIQSQHPVLKGMESVFSDENCEPFVEKPIPSAPPEPENMNSSASDEEKTEGEGLPVVEAFEEIENQSPSRRDYEQTEILGAVNLLPSAEVLLETRNEQLDEEIKSPQPLFVSEVFSQGETPVGLPTKSWQKSKLLGSLDSYVADDKIEIPLVAEVLEEVENQSPPRKGYEQREASGLHSGAITTESVNSSVPDRNILSDIGNQQFSNENQPPKPLPVTLGLSDDENPESPPVRLEQKSSLPNIWSRRGKPASVLQIQTGRSTRKCIGDGNGAKIRKPKQEDLENKPISRALFPMLDGEETEIFTPNKENFSPNTLLLKSVNKKKGILEETKQSTLCRSSSSKFSTGPNKCSEEDTSTFSDKENQTPQVLQTRKSVRPSPENSSRNRGKLEKEIMVMKRGAERVPFHSLLENAACKSKSEVSILGAKTRSSNSVNCTGTTGNATNSSFNNSAGEGKRRWNMVVDATCLLNKESRKSLQLLQGLKGTQLIIPRMVIRELDCLKRRGSLFRRISEVSLVLQWIEECMVKTKWWIHVQSSIEEGRPIAPTPPASPPRFSEGSGGFISGTTSSVPFSACGSLMEIVSPTAEDHILECALFFRRIKNDGQLVLFTNDVTLKIKAMAEGLNCETVEEFRESLVNPFSERFMWSDSSPRGQTWSYLDDVVLREKYYRCPLKKASKGGESAKGLKLILLHNSHYGKIGSIS* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1588 872 MobiDBLite consensus disorder prediction 347 383 - -
Vvi18g1588 872 Pfam PIN domain 630 798 IPR002716 -
Vvi18g1588 872 Pfam FHA domain 52 119 IPR000253 GO:0005515
Vvi18g1588 872 CDD PIN_Smg5-6-like 631 804 - -
Vvi18g1588 872 ProSiteProfiles Forkhead-associated (FHA) domain profile. 51 102 IPR000253 GO:0005515
Vvi18g1588 872 SMART FHA_2 50 102 IPR000253 GO:0005515
Vvi18g1588 872 PANTHER TRANSMEMBRANE PROTEIN 18 527 862 - -
Vvi18g1588 872 MobiDBLite consensus disorder prediction 196 219 - -
Vvi18g1588 872 SUPERFAMILY SMAD/FHA domain 43 132 IPR008984 GO:0005515
Vvi18g1588 872 MobiDBLite consensus disorder prediction 330 406 - -
Vvi18g1588 872 CDD FHA_PS1-like 12 133 - -
Vvi18g1588 872 MobiDBLite consensus disorder prediction 506 559 - -
Vvi18g1588 872 MobiDBLite consensus disorder prediction 506 523 - -
Vvi18g1588 872 MobiDBLite consensus disorder prediction 530 552 - -
Vvi18g1588 872 Gene3D - 3 132 - -
Vvi18g1588 872 SUPERFAMILY PIN domain-like 629 806 IPR029060 -
Vvi18g1588 872 Gene3D - 625 805 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1588 - - vvi:100260631 1707.19