Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01033 atgaagatgggtagttccaccttcactcatttctcctactcttctccttctctctcctctctatttcCATCTAAATCCACCTTTCAATCTCTTCCTTCTACCCTTATCTCCAATCCTTTCCCTTCTAAATTTCTCACTTCATCACCATGCTCTCTAAAAAAGATCAAAGCCTTGGGAATTCAGCAAACAGGATTCACTCCAAGTGGAGACAACCTTGATGCAGTCAAGAGTGGGATTGTTCTCCAGATGTTTGAAAGGGCAATGCCAATGGAACAACCACTTATAACCATTTTCACAAAACAATCCGAGATGACTGACTTTACAATGGAAAATCTTCAAGATTGGAGAAGATCATCAAAATGGGTTTTGCCATTCTTGTTTGGACAAACCATATCAGTTATTTCTCCTGGTGTTTCATATGCAAGCAACTCAGTGAAGATAAATGAGATCTATCAAGTCGGGGAGTTGTTTGACGTAGGAATCCAACTAATATACTTGCTACTGCTGTTGGGTTTGCTAGGGGCTGGGACTTACTATGTTATTCGACAAGTTCTTGTCCGCAGAGAACTCGACCTTTCTGCTAAAGAGTTACAGGAGCAAGTCAGAAGCGGTGATGCAAATGCAACTGAGCTTTTTGAACTTGGTGCGGTGATGCTGCGGAGAAAATTTTACCCAGCTGCTACCAAGTTTTTGCTTCAAGCAATTGAGAAATGGGATGGAGAAAGTCAGGATCTTGCTCAGGTTTACAATGCTCTTGGTGTCAGCTATGTTCGTGACGGAAAGCTCGACAAAGGAATTGCTCAGTTTGAGACAGCTGTGAAGCTTCAACCAGGCTATGTTACAGCGTGGAACAATCTTGGCGATGCATATGATAGTAAAAAAGAATTTGGGTCTGCTCTGAAGGCATTTGAAGAAGTCCTTCTATTCGACCCTAACAACAAGATTGCGCGGCCGAGGAGAGATGCTTTGAAGGAACTTGTTGGAATGTCCGAAGGAGTTACTGTCAAGTATAGAGAGAAGAAATGA 1026 0.3947 MKMGSSTFTHFSYSSPSLSSLFPSKSTFQSLPSTLISNPFPSKFLTSSPCSLKKIKALGIQQTGFTPSGDNLDAVKSGIVLQMFERAMPMEQPLITIFTKQSEMTDFTMENLQDWRRSSKWVLPFLFGQTISVISPGVSYASNSVKINEIYQVGELFDVGIQLIYLLLLLGLLGAGTYYVIRQVLVRRELDLSAKELQEQVRSGDANATELFELGAVMLRRKFYPAATKFLLQAIEKWDGESQDLAQVYNALGVSYVRDGKLDKGIAQFETAVKLQPGYVTAWNNLGDAYDSKKEFGSALKAFEEVLLFDPNNKIARPRRDALKELVGMSEGVTVKYREKK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01033 341 SUPERFAMILY TPR-like 204 318 IPR011990 GO:0005515
Car04g01033 341 ProSiteProfiles TPR repeat profile. 280 313 IPR019734 GO:0005515
Car04g01033 341 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Car04g01033 341 Gene3D Tetratricopeptide repeat domain 178 335 IPR011990 GO:0005515
Car04g01033 341 PANTHER TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN PYG7, CHLOROPLASTIC 50 334 - -
Car04g01033 341 ProSiteProfiles TPR repeat region circular profile. 280 313 - -
Car04g01033 341 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 50 334 - -
Car04g01033 341 Pfam Tetratricopeptide repeat 251 310 - -
Car04g01033 341 SMART tpr_5 246 279 IPR019734 GO:0005515
Car04g01033 341 SMART tpr_5 280 313 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01033 191 311 Glycosyltransferase AT3G11540 27.419 9.08e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01033 - - ahf:112712552 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01033 04 10496780 10500425 Car04g01033 04 10496780 10500425 ECH