Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00998 ATGGTGGGTTTATCTGTAGGAGAACAACATTTCATCCAAGGTGGCATTGCTCAAGATCTTCGTTGTGATGGTAGAAAGAGATTGACATATCGACCAATCTCTGTTGAAACTGGAGTGATTCCCCAGGCAAATGGTTCAGCAAGAGTCAGAATGGGTGCCACAGATGTCATTGCCAGTGTTAAGCCTGAACTTGGAAAGCCAAGCTTGTTGCAACCTGACAAAGGAAAAGTCTCTATATATATTGATTGCAGTTCGACTGCAGAGCCAGCTTTTGAGGGTAGAGGTGGTGATGAGTTGGCAGCAGAACTGTCAATTGCTCTTCAACGCTGTCTCTTAGGTGGTAAAAGTGGAGCAGGTGCTGGAATTGATCTCTCCTCGCTTATTGTTGTCGAAGGGAAAATTTGTTGGGATCTATATATTGATGGGCTTGTTGTTAGTTCAGATGGAAATTTGTTGGATGCTTTAGGTGCTGCCATTAAGGCTGCTTTAAGCAATACGGGTATTCCAAGAGTCCAAGTTGCTGCTGGAACATCAAATGATGAGCAACCAGAAGTTGACATAAGCGACGAGGAGTTTCTTCAGTTTGACACATCTGGAGTCCCTGTCATAGTTACACTGACTAAGGTTGGGAGGCACTATATTGTGGATGCAACATCAGAAGAGGAATCACAAATGAGCTCTGCTGTTTCTATCTCTGTTAATAGGCATGGGCACATCTGTGGTATAACCAAACGAGGAGGTGCAGGGCTGGATCCAAGCATCATTCTTGATATGATATCTGTGGCTAAGCATGTAAGCGAGCAAGTAATAAACAAATTGGATTCAGAAATAGCTTCTGCTGAAGCAGAAGAGGAGTCATGA 861 0.4367 MVGLSVGEQHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQANGSARVRMGATDVIASVKPELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSIALQRCLLGGKSGAGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSNDEQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRHGHICGITKRGGAGLDPSIILDMISVAKHVSEQVINKLDSEIASAEAEEES 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00998 286 Coils Coil 263 286 - -
Cca08g00998 286 Gene3D - 3 286 IPR027408 -
Cca08g00998 286 CDD RNase_PH_RRP42 4 274 - -
Cca08g00998 286 PANTHER EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN 1 284 - -
Cca08g00998 286 Pfam 3' exoribonuclease family, domain 2 200 263 IPR015847 -
Cca08g00998 286 Pfam 3' exoribonuclease family, domain 1 30 169 IPR001247 -
Cca08g00998 286 PANTHER BNAA05G29900D PROTEIN 1 284 - -
Cca08g00998 286 SUPERFAMILY Ribonuclease PH domain 2-like 196 282 IPR036345 -
Cca08g00998 286 SUPERFAMILY Ribosomal protein S5 domain 2-like 4 223 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00998 Cca-Chr8 24157431 24159689 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00998 K12589 - gmx:100818134 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00998 08 24157431 24159689 Cca08g00998 08 24157431 24159689 ECH