Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05079 ATGGCTTCAATCTCCGATAACCCTAACCCTAACCCTAACCCTAATCAAGAACCAGAACAATCCATAATTCCAGTGTTAACTGTTTTCAAAAACAAATCAATCCTCAAGAACATCTTCATCGTCCTCAACAACAACGATAATGACGATAACAACAACAACAACAACGATCACACTCTTCTCGTTGGTCGACATCCGAATTGCAATATAGTCCTCACTCATCCTAGCATCAGTCGCTTCCACTTGCAAATTCGATTCACTCCTTCTTCTCGTTCCATTTCCCTCCTCGATTTATCTTCTGTGCACGGAACTTGGGTGAGTGGTAGAAAGCTTGAACATGGTGTCAGTGTTGAACTGAAAGAAGGTGATAGTTTTCAACTTGGGGTTTCAAGTAGGATTTATCATCTTCACTTTGTATCCAAATTCGATGCCGACGCATTAAAGAAGATTGGTTCTTTAAGTTGTGATGATGAAAAGAAGAACCAATCTAAAGATGAGACATTTGAAGTTGATAATGACTCTTGTGGAAATGAAAAATCATGTTGTGATGGTCAAAATAAACTATGTGGATGTCAAATCTGTTTTCTATCTCCACCTTATGTGCAATCAGTTGATGAATCTGATAACACACAGATAAATGAAGCTTGTCAAGATGTGGAGATGCTGGAAGAGACTAATTTGCTTTGCACATTGCGGGAATGTTTTAAACACAACATATGTATCCTGGGCACTAAATTGAACCAACAATCTTCGGCGGAAAAACAGTGGATTAATCGTGACGCATCTTTTGATGAAAAAGACGATGCTGCTGTGGATGTGCTGTCTAAAGAATCTGATTTTGAAGTCACGTTCGAAGATACTGACAAGATTGAAGATATTTTAACTACTGGAGCAAGTGTTTTCGATTCTGAGGACATGACTGATTCTGCTGTGGATGTGATATCTAAAGAATCTGATTTTGAAGTAACTTTCGAAGATACCGACAAGATTGAAGATATTTTAACTACTGGAGCAAGTGTTTTCGATTCTGAGGACATGACTGATTCTGGATCTCATCCAACCAATTCTGATGCAGAACTTTCTATGGATTCACTCTCTGATAGAGAAGAACAAGGTAATTGCGGTGAAAAGTATGAGACAGAATTGCAGAACCTGAATGCTAATTGTTGCCTTGAGAAAGGGTATTCTCTTAATGAAATTGTTGAAGATATTGAAAAGATGTGCATTGAAAATACGGATCCTTCCGCTTTTGATGAAAATGGTGTAGCTGCAGTGAATGTAGCACCTAGAGAACACAAATTAGAATTCTTCTTTGAAGAAAATGACAGGATTGACGACATATTAACCAGTGTTGCAAGACTTTTCATTTCTGAAAACACATCTTCACTAGCTGAGGAAGCAATTCCTGTAATCAATTTTCAACAAATCAAGATTGTTGAAGAAGCTGCCGTGGATTCGATATCTGATGGAGAAAAGGAAAGTAAAGGTGACAAGGAATTGCAGGCATACCTAAATGTTAAACCATGTGATGAAGAAGGCAGCTTACTGGTTGAAACAGTTGAAGATACTGTGATATCCTTTCAGACAGAGTCACTTAATCCTTCAGTGACTCAGGATCTGGATTTAGAGGTTACAGAGAAGAAAGAGAATCAGACCCCGCAATCTCTTGTTGCTGTGGATGGAAAAGTTGACGCAGGAATCCTTGAAAGAAGCTGTATAGAAGAATCAGCAAAGGGATGTTCAACCTTTGGTAGTGATGATGAGGTTAGCCCACTGGATGAAACATATGAAGATACTGTGAAATCCTTTCAGACAGAGTCACTTAATCCTTCAGTGACTCAGGAAGCTGATCTAGAGATTACAGACAAGAAAGAGAATTGGACCCCGCAATCTCTTGTTACTGTGGATGGAAACGTTGACATGGGAATCCTTGAAAGTAGCTGTATAGAAGAATCAGCAAAGGGAAGTTCAACCTTTGGTAGTGATAATTTGTCAAAAAGAGATAAGGCTGCGAGTGCGCCTCAAGATCGAACCAGGAAGAGCAGATTATTGAACACACCTAATGTTGACACTAAATTTGTAATGAGTAACTTGAAGGATATCAATATCACAAATAAACCAATGCCAAAGGATCTTTTCTCTGTCTTGGATGAAGAAGAAATGTTCACTCCAAATAAGGAAATCTCAAGCCCCACAAACACCTTTCACTTGCAGTTTATAGGAAAGAAAGGCGTGCTAGAAGAAAGTAAAAGTTCCAAGTCACAAAGGTCACGTAATTTGACGGTTAGTTTTAGTCCCATCATCTATTCAGCTGAAAGAAGTGCAAGTGCGATTTCAAACAAAGAGAACCAGACTCCAAGAGAGGCACAAGAATGGAAGTCACAAAGAAAGCCTCTTGAGCGTCACGATACTACGGAATTAAGAAAGAAGAAAGTGGAACGGAGACCCTTACAATCGCTAATGAGTTCTGGAGGCAATAGCAATTCAAGGATCTATAGTCCTCTTTCTGCTGCAAAATCCATTGTTGGGGTCACTGCTAGAGCCAGCAACTGTGGACATATTTCATACAAGCACACTGAGCCTTCTAGTATTAGTGAAGAACGAAAGAAGAGCTGGGACATGGTTGTAGATACTGCTTCCCTTCTGAACAAGGAGTCAAGAAAGGCTTTGCAGCTTTTACAAGGTCTCAAGGGGACTCGTTTAATCATTCCACAATCAGTCATAAGAGAATTGGGAAGCATTAAGCAACAATTTGGAATTTTTAGAAAGACTTCAGAGGCTAATTTGGCCTTGAAATGGATTGAAGAATGCATGGGGAATACAAAGTGGTGGATTCATATCATTGACTGTGCTTTTCCTATGGTTGAAGATCACATCCTTGACTGTGCTCTTGAATATAGAAGGAAATATAATGTTGGACATGTTGTCCTTCTTAGTGATGATATCGTCTTGAAAATCAAATCCATGGCAAAGGGGTTGCTATGTGAGACAGTGCAGCAATTTCGTCAGAGTTTAGCCAACCCTTTCTCTGAGAGGTTTATGTGGGGTAACAGCTTTCCAAGAGGACTGACTTGGTCTTGCCAAGATGATGTGGTTTTAAGAGAGAAATATTGTTGTTTGCCATCAAAGGCTGGTCTGAAGCTCCTTGTCACTTAA 3153 0.3945 MASISDNPNPNPNPNQEPEQSIIPVLTVFKNKSILKNIFIVLNNNDNDDNNNNNNDHTLLVGRHPNCNIVLTHPSISRFHLQIRFTPSSRSISLLDLSSVHGTWVSGRKLEHGVSVELKEGDSFQLGVSSRIYHLHFVSKFDADALKKIGSLSCDDEKKNQSKDETFEVDNDSCGNEKSCCDGQNKLCGCQICFLSPPYVQSVDESDNTQINEACQDVEMLEETNLLCTLRECFKHNICILGTKLNQQSSAEKQWINRDASFDEKDDAAVDVLSKESDFEVTFEDTDKIEDILTTGASVFDSEDMTDSAVDVISKESDFEVTFEDTDKIEDILTTGASVFDSEDMTDSGSHPTNSDAELSMDSLSDREEQGNCGEKYETELQNLNANCCLEKGYSLNEIVEDIEKMCIENTDPSAFDENGVAAVNVAPREHKLEFFFEENDRIDDILTSVARLFISENTSSLAEEAIPVINFQQIKIVEEAAVDSISDGEKESKGDKELQAYLNVKPCDEEGSLLVETVEDTVISFQTESLNPSVTQDLDLEVTEKKENQTPQSLVAVDGKVDAGILERSCIEESAKGCSTFGSDDEVSPLDETYEDTVKSFQTESLNPSVTQEADLEITDKKENWTPQSLVTVDGNVDMGILESSCIEESAKGSSTFGSDNLSKRDKAASAPQDRTRKSRLLNTPNVDTKFVMSNLKDINITNKPMPKDLFSVLDEEEMFTPNKEISSPTNTFHLQFIGKKGVLEESKSSKSQRSRNLTVSFSPIIYSAERSASAISNKENQTPREAQEWKSQRKPLERHDTTELRKKKVERRPLQSLMSSGGNSNSRIYSPLSAAKSIVGVTARASNCGHISYKHTEPSSISEERKKSWDMVVDTASLLNKESRKALQLLQGLKGTRLIIPQSVIRELGSIKQQFGIFRKTSEANLALKWIEECMGNTKWWIHIIDCAFPMVEDHILDCALEYRRKYNVGHVVLLSDDIVLKIKSMAKGLLCETVQQFRQSLANPFSERFMWGNSFPRGLTWSCQDDVVLREKYCCLPSKAGLKLLVT 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05079 1050 Pfam FHA domain 60 127 IPR000253 GO:0005515
Trre1g05079 1050 Gene3D - 868 1005 - -
Trre1g05079 1050 SMART FHA_2 58 110 IPR000253 GO:0005515
Trre1g05079 1050 MobiDBLite consensus disorder prediction 654 684 - -
Trre1g05079 1050 MobiDBLite consensus disorder prediction 339 360 - -
Trre1g05079 1050 MobiDBLite consensus disorder prediction 339 372 - -
Trre1g05079 1050 SUPERFAMILY SMAD/FHA domain 52 139 IPR008984 GO:0005515
Trre1g05079 1050 Gene3D - 4 138 - -
Trre1g05079 1050 MobiDBLite consensus disorder prediction 785 815 - -
Trre1g05079 1050 ProSiteProfiles Forkhead-associated (FHA) domain profile. 59 110 IPR000253 GO:0005515
Trre1g05079 1050 Pfam PIN domain 873 997 IPR002716 -
Trre1g05079 1050 PANTHER TRANSMEMBRANE PROTEIN 18 17 1049 - -
Trre1g05079 1050 MobiDBLite consensus disorder prediction 774 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05079 Trre-Chr1 57032106 57036347 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05079 - - cam:101515102 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05079 1 57032106 57036347 Trre1g05079 1 57032106 57036347 ECH