Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1593 ATGACCAAGTGTGAGCAGACCACCTGCGTCATCTTCTTCCTCTCATGCCTTCTTCCTTTAGGGTTATCTCAGCTGTCTGCAAACCAGAGGGCCACCATGTTCAAGCTCTCTGAGCTTCTCAAAGACGCTACATCCTCTGTGTGGATTGTTGCACAAGAGCCAAACCCATGTGGATGGAAGGGAGTTTCATGCACCTCCAACAACGCCTCAATAACCCATCTTTCCCTCTCTGATTTGTCTCTTACTGAATCTGGTTTTCTTCCACTTGTTTGTGAGATTGTGTCTTTGGAAGCTCTTGACCTCTCCAACAACCGTTTGAGCTCAATCCCAGATGGGTTCATCACTGCTTGTGGGAAGATTGGTGGGTTGAAGCTGTTGAGTTTCAGTAGAAACAGGTTGGTTGGTGCTTTGCCTACTTTTAATGGCTTTATTGGGCTGCAGTTCTTGGATTTTTCTTACAATAGTTTGAGTGGAAACATTGGTTTACAGTTAGATGGATTGAATGAACTCAGAACTTTGAATCTGAGCTCTAACCAGTTCAGTGGCCATGTTCCTACCCACCTTGGAAAGTCCAGGGTATTGGAGCATCTTCTACTTTCCAAGAATTTTTTTCATGGGGGAATTCCGAAAGTAATCTTTGATTATCATAAGTTGGTTCTGATTGATCTCAGTAATAATCAGCTTTCTGGGTCTTTACCTGCAAGGATTGGAGACCTCTCCAAACTGAAAATATTGATTCTGTCATCCAATAATTTGAGTGGAGAAATCCCAACAAATCTTTCAAACATCAGAACTCTTTCAAGATTCGCAGCGAATGAAAACAATTTCAATGGCAACATTCCCAATGGAATTTCAAGGTTTCTCAAGATTTTGGATCTTAGTTATAATAAGTTAAGTGGGTCGATCCCATCTGACCTGATGATGCAGCCGAAACTACAGAGAGTGGACCTGTCTTACAATTTGTTGGGTGGGTCGATACCTGCAAACATGTCTTCAAGCTTGGTTAGGTTGAGATTGGGAAGCAATTCACTCAGCGGGGTAATCCCATCTGCAAAGCTGGGGACACTGCTGAAATTGACCTACTTGGAGCTGGAAAACAATAGTTTGTCGGGATCCATCCCTCCTGAATTGGGTTCCTGCCAGAGTTTAGCGCTGCTGAACCTGGCAATGAATAATTTGGCAGGTCGTCTGCCCCTGGAGTTGGGTAGCCTTAATCATCTTCAGGTTTTGAAGCTTCAGTCCAACAAACTGACTGGCGAGATCCCGGATCAGATAACCCAAATCCAAAGTTTGTTGGTGCTGAATATCAGTGAGAATTTGCTAAGTGGCGGAATCCCATCTTCTATTTGGAGGCTGAAGAGCCTTACCAACTTGAACTTAGGAGGGAACCGTCTTTTGGGGTCCATACCTCCATCAATCAGTCGCTTCAATTCTCTATTAGAACTTCAGCTGGGAAGGAATCAACTGAGTGGCCACATTCCAATGATGCCGAGCAGCTTGCAGATTGCCTTGAATCTCAGCCACAACCTCTTTGAAGGACCTATCCCAAACACTCTCTCTCGGTTGAGCAGTTTAGAAGTGTGGGATCTGTCGAACAACAAATTCTCAGGTGAGATTCCAATATTTCTGACGCTGTTTAGATCGATGACACAGTTGTTACTCTCAAATAATCAGCTTTCCGGAGTTATTCCCAAGTTTGGGCATTGGGTTGCTGTGGATACAAGTGGAAATCCAAGGCTAGTTAACACCACGTCACACCCTATCTCAACACGAAAATCGCAATATAAGATGAAGTCAGTGGGTTCGTCAGTTGCAGTTGCAGTTGCAGTGGGAACTGCTTCTCTTGCTCTCGGAATAACAATGGCGATTCTGATTGCAGTGTCTAGATCCAGACGCCATGGCAGGGTCAAAAGCAATTAG 1920 0.4432 MTKCEQTTCVIFFLSCLLPLGLSQLSANQRATMFKLSELLKDATSSVWIVAQEPNPCGWKGVSCTSNNASITHLSLSDLSLTESGFLPLVCEIVSLEALDLSNNRLSSIPDGFITACGKIGGLKLLSFSRNRLVGALPTFNGFIGLQFLDFSYNSLSGNIGLQLDGLNELRTLNLSSNQFSGHVPTHLGKSRVLEHLLLSKNFFHGGIPKVIFDYHKLVLIDLSNNQLSGSLPARIGDLSKLKILILSSNNLSGEIPTNLSNIRTLSRFAANENNFNGNIPNGISRFLKILDLSYNKLSGSIPSDLMMQPKLQRVDLSYNLLGGSIPANMSSSLVRLRLGSNSLSGVIPSAKLGTLLKLTYLELENNSLSGSIPPELGSCQSLALLNLAMNNLAGRLPLELGSLNHLQVLKLQSNKLTGEIPDQITQIQSLLVLNISENLLSGGIPSSIWRLKSLTNLNLGGNRLLGSIPPSISRFNSLLELQLGRNQLSGHIPMMPSSLQIALNLSHNLFEGPIPNTLSRLSSLEVWDLSNNKFSGEIPIFLTLFRSMTQLLLSNNQLSGVIPKFGHWVAVDTSGNPRLVNTTSHPISTRKSQYKMKSVGSSVAVAVAVGTASLALGITMAILIAVSRSRRHGRVKSN* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1593 639 Pfam Leucine Rich repeat 286 300 IPR001611 GO:0005515
Vvi18g1593 639 SUPERFAMILY RNI-like 200 564 - -
Vvi18g1593 639 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vvi18g1593 639 Gene3D Ribonuclease Inhibitor 185 286 IPR032675 -
Vvi18g1593 639 Pfam Leucine Rich Repeat 358 380 IPR001611 GO:0005515
Vvi18g1593 639 SUPERFAMILY L domain-like 53 284 - -
Vvi18g1593 639 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Vvi18g1593 639 FunFam Uncharacterized protein 286 590 - -
Vvi18g1593 639 Gene3D Ribonuclease Inhibitor 287 591 IPR032675 -
Vvi18g1593 639 ProSiteProfiles Leucine-rich repeat profile. 95 116 IPR001611 GO:0005515
Vvi18g1593 639 PANTHER OS05G0588300 PROTEIN 333 448 - -
Vvi18g1593 639 PRINTS Leucine-rich repeat signature 167 180 - -
Vvi18g1593 639 PRINTS Leucine-rich repeat signature 96 109 - -
Vvi18g1593 639 Pfam Leucine rich repeat 406 465 IPR001611 GO:0005515
Vvi18g1593 639 SMART LRR_typ_2 167 191 IPR003591 -
Vvi18g1593 639 SMART LRR_typ_2 452 476 IPR003591 -
Vvi18g1593 639 SMART LRR_typ_2 93 116 IPR003591 -
Vvi18g1593 639 SMART LRR_typ_2 239 263 IPR003591 -
Vvi18g1593 639 SMART LRR_typ_2 404 428 IPR003591 -
Vvi18g1593 639 SMART LRR_typ_2 356 380 IPR003591 -
Vvi18g1593 639 SMART LRR_typ_2 546 568 IPR003591 -
Vvi18g1593 639 FunFam Phytosulfokine receptor 1 187 285 - -
Vvi18g1593 639 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 27 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1593 Vvi-Chr18 20264229 20266148 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1593 141 566 Receptor kinase-like Gene Family AT2G41820 40.690 1.93e-72 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1593 - - vvi:100255560 1158.67