Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1596 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cca08g00946 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu9g0207 . . . . . . . . . . . . . . . . . . . Vra1g1446 .
Vvi18g1597 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1598 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1599 . . . . . . Aed7g0822 . . . . . . . . . . . . . . . . . . . . . . . Cca08g00943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra1g1444 .
Vvi18g1600 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cca08g00942 . . . . . . . . . . . . . . . . . . . . . Lal2g1034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra1g1440 .
Vvi18g1601 . . . . Adu09g03172 . . . . . . . . . . . . . . . Arst9g04250 . . . . . . . . . . . . . . . . . . . Gma10g02063 Gma20g01650 . . Gso10g1932 Gso10g1932 . . Lal13g0107 . . . . . Lan20g0122 . . . . . Lapu7g01867 . Lasa6g03827 . . . . . . . . . . . . . Mepo4g04045 . Mesa1g04384 . . . . . . . Phco6g02247 . . . . . Pste4g02235 . . . . . Pumo3g01238 . Pvu7g0926 . Rops6g02491 . Seca8g07153 . Spst10g00736 . . . . . . . Trre1g05085 . . . Vian3g00808 . Vifa3g02650 . Vimu3g02814 . Viun7g02984 . Vivi1g04675 . . .
Vvi18g1602 . . . . . . . . . . . . . . . . . . . Apr6g1232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1603 Acco02g3435 . Accr2g00479 . Adu09g03171 . . . . . . . . . Alju01g3420 . . . . . Arst9g04246 . . . Bisa03g2872 . . . Car04g01038 . . . Dere01g0440 . . . Enph2g2445 . Glsi12g0911 . Gma10g02064 Gma20g01648 . . Gso10g1935 Gso10g1935 . . Lal13g0106 Lal12g0129 . . . . Lan20g0121 Lan20g0121 . . . . Lapu7g01869 . . . Lele05g2540 Lele06g2521 Lele07g2556 Lele08g2457 . . . . Lja5g0825 . Mal1g2900 . Mepo4g04050 . Mesa1g04394 . Mibi02g3132 . Mtr1g3544 . Phac7g01386 . Phco6g02250 . Prci1g0491 . . . Pste4g02251 . Pte18g00267 . . . Pumo3g01233 . Pvu7g0923 . Rops6g02497 . Seca8g07164 . Spst10g00739 . . . . Sto8g2347 Tpr1g0951 . Trre1g05100 . Tsu01g04201 . Vian3g00805 . Vifa3g02667 . Vimu3g02815 . Viun7g02986 . Vivi1g04670 . . .
Vvi18g1604 . . . . . . . . Aev09g2056 . Ahy19g2698 . Aip09g03151 . . . Amo19g3423 . . . . . . . . . . . . . . . . . Dod06g0973 . . . . . . . . . . . . . . . Lal24g0100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g4281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1605 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal9g0947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g1596 Chr18 20331603 20345851 -
Cca Cca08g00946 Chr08 22334919 22344004 +
Ssu Ssu9g0207 Chr9 12377382 12394782 +
Vra Vra1g1446 Chr1 22276377 22284292 +
Vvi Vvi18g1597 Chr18 20357022 20367403 -
Vvi Vvi18g1598 Chr18 20396978 20421389 +
Vvi Vvi18g1599 Chr18 20434130 20435902 +
Aed Aed7g0822 Chr7 6280764 6284089 -
Cca Cca08g00943 Chr08 22223562 22228205 -
Vra Vra1g1444 Chr1 22208221 22210665 -
Vvi Vvi18g1600 Chr18 20438347 20441387 +
Cca Cca08g00942 Chr08 22196639 22200824 -
Lal Lal2g1034 Chr2 7099041 7103214 -
Vra Vra1g1440 Chr1 22006371 22010697 -
Vvi Vvi18g1601 Chr18 20443201 20449177 -
Adu Adu09g03172 Chr09 119616447 119620027 -
Arst Arst9g04250 Chr9 117500338 117503880 -
Gma Gma10g02063 Chr10 48153736 48158788 +
Gma Gma20g01650 Chr20 43611345 43617076 -
Gso Gso10g1932 Chr10 46279555 46283960 +
Gso Gso10g1932 Chr10 46279555 46283960 +
Lal Lal13g0107 Chr13 673407 677182 -
Lan Lan20g0122 Chr20 733750 737241 -
Lapu Lapu7g01867 Chr7 34661994 34668158 +
Lasa Lasa6g03827 Chr6 596968317 596972020 +
Mepo Mepo4g04045 Chr4 50042376 50046421 +
Mesa Mesa1g04384 Chr1 69311673 69315519 +
Phco Phco6g02247 Chr6 43640908 43645361 +
Pste Pste4g02235 Chr4 16179098 16184015 +
Pumo Pumo3g01238 Chr3 19963815 19969328 -
Pvu Pvu7g0926 Chr7 9148854 9154386 -
Rops Rops6g02491 Chr6 45280310 45284163 +
Seca Seca8g07153 Chr8 167758920 167764698 +
Spst Spst10g00736 Chr10 7725682 7729988 +
Trre Trre1g05085 Chr1 57073929 57075078 +
Vian Vian3g00808 Chr3 8500450 8505321 -
Vifa Vifa3g02650 Chr3 731615280 731618727 +
Vimu Vimu3g02814 Chr3 42393225 42398819 +
Viun Viun7g02984 Chr7 32807731 32812612 +
Vivi Vivi1g04675 Chr1 99952100 99956269 -
Vvi Vvi18g1602 Chr18 20462869 20464182 -
Apr Apr6g1232 Chr6 16792108 16798024 -
Vvi Vvi18g1603 Chr18 20473931 20492034 -
Acco Acco02g3435 Chr02 48333676 48341809 -
Accr Accr2g00479 Chr2 10689568 10696683 +
Adu Adu09g03171 Chr09 119609737 119614733 +
Alju Alju01g3420 Chr01 62538742 62545175 -
Arst Arst9g04246 Chr9 117493485 117498599 +
Bisa Bisa03g2872 Chr03 46114011 46126751 +
Car Car04g01038 Chr04 10534883 10540950 -
Dere Dere01g0440 Chr01 9535096 9542198 +
Enph Enph2g2445 Chr2 40757789 40766760 -
Glsi Glsi12g0911 Chr12 26766317 26774381 +
Gma Gma10g02064 Chr10 48174179 48181591 -
Gma Gma20g01648 Chr20 43575288 43582992 +
Gso Gso10g1935 Chr10 46303586 46311238 -
Gso Gso10g1935 Chr10 46303586 46311238 -
Lal Lal13g0106 Chr13 666604 672511 +
Lal Lal12g0129 Chr12 891748 897967 +
Lan Lan20g0121 Chr20 727339 732779 +
Lan Lan20g0121 Chr20 727339 732779 +
Lapu Lapu7g01869 Chr7 34673005 34681697 -
Lele Lele05g2540 Chr05 41177814 41183375 -
Lele Lele06g2521 Chr06 33008233 33014206 -
Lele Lele07g2556 Chr07 30941941 30948350 -
Lele Lele08g2457 Chr08 30299135 30306866 -
Lja Lja5g0825 Chr5 7849943 7857197 +
Mal Mal1g2900 Chr1 41480179 41486705 -
Mepo Mepo4g04050 Chr4 50108094 50115916 -
Mesa Mesa1g04394 Chr1 69394479 69400863 -
Mibi Mibi02g3132 Chr02 55954450 55961259 -
Mtr Mtr1g3544 Chr1 47024503 47032501 -
Phac Phac7g01386 Chr7 9334941 9342824 +
Phco Phco6g02250 Chr6 43662437 43669209 -
Prci Prci1g0491 Chr1 4579940 4588405 +
Pste Pste4g02251 Chr4 16244883 16252617 -
Pte Pte18g00267 Chr18 4279577 4281020 -
Pumo Pumo3g01233 Chr3 19914323 19922614 +
Pvu Pvu7g0923 Chr7 9126136 9133971 +
Rops Rops6g02497 Chr6 45338188 45343467 -
Seca Seca8g07164 Chr8 167862911 167870004 -
Spst Spst10g00739 Chr10 7748188 7749595 -
Sto Sto8g2347 Chr8 15821416 15828733 -
Tpr Tpr1g0951 Chr1 8215321 8223055 +
Trre Trre1g05100 Chr1 57191822 57197418 -
Tsu Tsu01g04201 Chr01 49860857 49868151 -
Vian Vian3g00805 Chr3 8478155 8489859 +
Vifa Vifa3g02667 Chr3 733351459 733360820 -
Vimu Vimu3g02815 Chr3 42403302 42412631 -
Viun Viun7g02986 Chr7 32824285 32831546 -
Vivi Vivi1g04670 Chr1 99870767 99881184 +
Vvi Vvi18g1604 Chr18 20503034 20524643 -
Aev Aev09g2056 Chr09 23760393 23764026 -
Ahy Ahy19g2698 Chr19 148049641 148053322 -
Aip Aip09g03151 Chr09 136748693 136752155 -
Amo Amo19g3423 Chr19 147461921 147465532 -
Dod Dod06g0973 Chr06 12392071 12396528 +
Lal Lal24g0100 Chr24 678822 682716 +
Psa Psa6g4281 Chr6 379084837 379088284 -
Vvi Vvi18g1605 Chr18 20554543 20555816 -
Lal Lal9g0947 Chr9 7274225 7283456 +