Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02813 ATGGGTGGTTCCATTTTCACTCACTTCCTCCTTCTCCCTTCCACTTCTTCTCCCTCTCTTTCCACTCTGTTCCCATCCAAGTTCAACGACTCTGTTCCCTTCACCCTTTTCTGCAACCAATTCCCTTCCAAAGTCTCTACTTCCTCCCCTTCCCAATTCTCACATCCTCGTCGTCACTCATTGTTAGTGGTTAATGTTGTTCAAGAGAGCACTGAATTGGGTGGCTATGTAATTGGATTTTCAGAGAATGACTTTACAACCAAACATCTTGAAGATGGTGCAAGATCATCCAAATGGGTTTCAGCATTCTTGTTTGGACAAACTTTATCAGTGATTTCTCCTGATGTTTCTTATGCAAGCAGCTCAATGAAGATAAATGAGTTATATGAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGGTCACTCATCATCTAGACCTCTATTGACTTATCAAAGGCGAAATACTACCACTCAACATCACCTAGCACAAGTCCATGGGCCCTTTCAAGATAATTCCTTGGATGTTGATCCAGTACAAGCTCCTTTACGACGCAGTTCACGCATTGGTAAGCCTCCAGAAAGGTATATATGTTCCATGACAGCAACATTATCATCTATTCCTATTCCTTCTTCTTATAAACCGGCAATGAAGAATGAATGTTGGCAAAAAGCTATTGAAAGTGAATTTCTCGCCTTGGAGGAAAATCAGACATGGGATATTGTGCCATTGATGCTGCGAAGGAAATTTTACCCTGCTGCTACCAAGTACTTGCTTCAAGCAATTGAGAAATGGGATGGGGATAATCCTGATCTTGCTCAGGTTTACAACGCTCTTGGTGTAAGCTATGTCCGCGATGGAAAAGTTGACAAGGGAATTGCTCAGTTTGAGACAGCTGTGAAGCTTCAACCAGGCTATGTCACTGCTTGGAACAATCTTGGAGATGCCTATGACAGTAAAAAAGATTACAAGTCAGCTTTGAAGGCATTTGAAGAAGTCCTACTATTTGATCCTAACAACAAGGTTGCAAGGCCTAGGAGAGATTCTTTGAAGGGACTTGTTGAAGCAGCCAAAGGAGTTACCGTCACAAAATCAACCGAGAAGAAATAA 1110 0.4216 MGGSIFTHFLLLPSTSSPSLSTLFPSKFNDSVPFTLFCNQFPSKVSTSSPSQFSHPRRHSLLVVNVVQESTELGGYVIGFSENDFTTKHLEDGARSSKWVSAFLFGQTLSVISPDVSYASSSMKINELYERTRPICQRVAGHSSSRPLLTYQRRNTTTQHHLAQVHGPFQDNSLDVDPVQAPLRRSSRIGKPPERYICSMTATLSSIPIPSSYKPAMKNECWQKAIESEFLALEENQTWDIVPLMLRRKFYPAATKYLLQAIEKWDGDNPDLAQVYNALGVSYVRDGKVDKGIAQFETAVKLQPGYVTAWNNLGDAYDSKKDYKSALKAFEEVLLFDPNNKVARPRRDSLKGLVEAAKGVTVTKSTEKK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02813 369 Pfam Tetratricopeptide repeat 278 337 - -
Vimu3g02813 369 SUPERFAMILY TPR-like 251 345 IPR011990 GO:0005515
Vimu3g02813 369 Gene3D Tetratricopeptide repeat domain 244 351 IPR011990 GO:0005515
Vimu3g02813 369 SMART tpr_5 273 306 IPR019734 GO:0005515
Vimu3g02813 369 SMART tpr_5 307 340 IPR019734 GO:0005515
Vimu3g02813 369 ProSiteProfiles TPR repeat region circular profile. 307 340 - -
Vimu3g02813 369 ProSiteProfiles TPR repeat profile. 307 340 IPR019734 GO:0005515
Vimu3g02813 369 ProSiteProfiles TPR repeat profile. 273 306 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02813 Vimu-Chr3 42382850 42391770 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02813 - - gmx:100785939 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02813 3 42382850 42391770 Vimu3g02813 3 42382850 42391770 ECH