Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03460 ATGGCAGAGAGGAACCCAGAAGAAGAAGAGGGGAAAATTCCACTGTTGACAGTGCTGAAGAACAATGCAGTTCTTAAGAACATCTTCATTGTGAACAAGCCCCCAGAAGGATACTCTCCTCGCGACCACGAAGACATTTTCCTCGTTGGTCGACACCCCGATTGTGACCTCATGCTCACTCACCCTAGCATCAGCAGATTCCACCTCCACATTTGCTCCACACCCTCTACCCTCCACTTCTCCGTCGTCGATTTATCTTCAGTGCACGGGACGTGGGTGTCGGGGAGGAAGATTGAGGCTGGGGCGAGGGTTGAGATGAAGGAAGGAGACACACTGAAGCTTGGTGTTTCGAGCAGGGTTTATCGTCTGCATTGGATTCCGATCAGCCTCGCCTATGATTTGGAAAACGCCTTTGTTCCCGAGGTGGACAAAATAATGCAAGAAGAAGCAGCAGTACAACTAGGAGGAGAGAGCGTGCAGGAAGAGCACAAGAATTCGAATAGCAGTACTATTGAAATGGAAGAAATTGAAACAGAGGATTCAATTCTTGAGTGTATCAAATCTTTATTCCTTGATGAGAATGTGGGACTAACTGCCGAGGAGGAGATTCTGGTGGCACCTCAGATGTTGGACGACATTGTTTCTTTATGTTCTCAAGTTGAGATGGAAGAAATTCAACCAGTGGATTCAATACTTGAGTGTATCAATTCTTTATTCCTTGACGAGGATGTAGAACTGAATGTGAAAGAGGAGATTCCAGTGGCACCTGGGATGCTCGAAGACATTGTTTCTTTATGTTGTGACGAAGAAAGGAAGAGTCCATCAAAAGATGAAACATTTGGAGTCCCAAGTGATCCTTTTGGAACTGAAACATCATATTCATCTACAAATGGTGAAAACAAGCTATGTGACTCTCAGATCCAGGTTCTATTACCACCTTATTTGGAATCAGTTGTTGAATGTGATAATACATTGTTTGAGAATAATGGGGAAGAAGATACATTTGCTTCACCATTACAACCTGATATTGAGAATTCATTTAAGAAGCATTGTTCTAGATTGCTTATTACATTGTTTGAGAATAATGGGGAAGAAGATACATTTGCTTCACCATTACAACCTGATATTGAGAATTCATTTAAGAAGCATTGTTCTAGATTGCTTATAAATACTGGCGATACTACATCTTTTTATGAAAAAGGTGCAGCTGAGACTATAATATCTAAAGAATCTGTTTTTGGATGTATAGTCGGAAATAATGGAAAGGTAGTCAGAGATAATGGAAGGGTCACAGATGTTTTAACTGCTAGAGGTGGAATTTTCTATTCTGAGAACACGTTTTTGCCTGTTGAGGAAGTTACCCCTGGTATCAAATTTCAAGAAATCAAAGTTATTGAAGAAATTGATATGGATTCACTATTTGATGGAGAAAAACAAGATACATGTGGCCAAAGGCTCTCACTCAATGAAATAGTTAAAGATATTGGAAACAAGTTCACAGCTAGCACCTGTCACATATCACTTCAGATAGAGTCAGGGAATTTGTCAAAAGAGAACCAGGCCATAAAACCTGATATGGAAATCCTTGAATGCATTGAAGCAATGGATAAGAATTCAACAATTTGTAATATTTGGTCAAGAAGAGGTAAAGCTACTAGTGCTCCTCAGGTTCGAACAATCAAGAATATACTCAAGAGCACAGCTAATGTTGATGCAACAAGCAATGAGAATGATATCATAAATAAAGCAATCTCGAAGGATCTTCTCTATGTTCTGGATGGGGAAGAAGAAGAAGAAATCTTCACTCCAAATAAAGAAAACTTAAGCCCAAATACCCTTCAATTGCAGTTTCCAAAAAAGAAGGGTAGGCAAGAAGATGTCAAACTTTCCAATTCACAAAGATCTCACAAAAAGGATAATTTTAATCCTGACATCTATCCAGATGAAAGCATCACTCCCACATTAAGCAAAAAGAACCAGAAGGATCTTTTCTCTGTTTTTGTTGGGGAAGAAGAAGAAATCTTCACTCCAGATAAGGAAAACTTCAGCCCTAATACCCTTAAATTGTGGCTTCTGAAAAAGAAGGGCAAGCTAGAAGATATTGAATGTTCGAAGTCTTTTGGTCTGAACATAAATCCAGATGAAAACATAAGCCCCATCTCAAACAAAGAGAATCATCAGACTCCAAAAGGAGCCCAAGATCAAAAGTTGCAAAGAAAGCCTTTTAGTAGTTGTATCAAGTTGTTTCAGGAGCATGATGTTATGGCATTGAAGAACAGAGTGGAAAGGACACCCTTTCAATCACTAAAGAACACAAGAAGCAAGGGAAGATCAGGCATTTCTTGTCCTGTTTCTGCTGCGAAAAGCATTGATGTCAGTAAATGCAGACAAATTTTAGACATGCATATTAAACCTTCTGATACTATTGGGGTGCAAAAGAGAAGCTGGAACATGATTGTGGACACTACTTCTCTTATGAACAAGGAATCAAGGAAAGCTCTGCAGCTTTTACAAGGTCTCAAGGGGACTCGATTGATCATTCCAAGATTTGTCGTAAGGGAACTGCACAGTATGAATCAACAGTTCTCAATTTTTCGAAGAATTTCAGAGGCTTCTTTGGCGTTGGAATGGATTGAAGAATGTATGATGAAGACAAACTGGTGGATTCATATCCATAGCTCGGTAGAGGAAGGAAGCCTGATTGCTCCGACCCCACCTGCGTCTCCTCAGACTCAATTTGGTGAAGAGAGTTTAGCATTACTTGGTGGGATTGGGAGCTTGCGGCCTGTATCACCCCAATCCATGGAAATTCCATCACCAACAGTAGAAGATCACATCCTTGAGTTTGCTGTTATATACAAAAGAAAGCAAAATAATGCACAACTTGTCGTGCTTAGTGAGGATGTCACGTTTAAAATCAAATGCATGGCAGAGGGGTTACTCTGTGAGCCAGTGCAGGAATTTCGTGAGAGTCTAGTGAATCCATTCTCTGAGAGGTTCTTGTGGGCAAACAGCTCTCCTCGAGGACAGACTTGGTCTTGCCAGGACGATGTAGTTTTGAGGGAGAAGTACTTGCGTTTGCGTTTGCCGTTGAGGAAGTCATCAAAGGGAGTTGCAAGCGGTTTGAAGCTTATTCTGCTTCACAATTCTCTATATGGCCACACAGTTCAGGAGAGCCTGCTAAAGAGTTATGTTTAG 3198 0.4065 MAERNPEEEEGKIPLLTVLKNNAVLKNIFIVNKPPEGYSPRDHEDIFLVGRHPDCDLMLTHPSISRFHLHICSTPSTLHFSVVDLSSVHGTWVSGRKIEAGARVEMKEGDTLKLGVSSRVYRLHWIPISLAYDLENAFVPEVDKIMQEEAAVQLGGESVQEEHKNSNSSTIEMEEIETEDSILECIKSLFLDENVGLTAEEEILVAPQMLDDIVSLCSQVEMEEIQPVDSILECINSLFLDEDVELNVKEEIPVAPGMLEDIVSLCCDEERKSPSKDETFGVPSDPFGTETSYSSTNGENKLCDSQIQVLLPPYLESVVECDNTLFENNGEEDTFASPLQPDIENSFKKHCSRLLITLFENNGEEDTFASPLQPDIENSFKKHCSRLLINTGDTTSFYEKGAAETIISKESVFGCIVGNNGKVVRDNGRVTDVLTARGGIFYSENTFLPVEEVTPGIKFQEIKVIEEIDMDSLFDGEKQDTCGQRLSLNEIVKDIGNKFTASTCHISLQIESGNLSKENQAIKPDMEILECIEAMDKNSTICNIWSRRGKATSAPQVRTIKNILKSTANVDATSNENDIINKAISKDLLYVLDGEEEEEIFTPNKENLSPNTLQLQFPKKKGRQEDVKLSNSQRSHKKDNFNPDIYPDESITPTLSKKNQKDLFSVFVGEEEEIFTPDKENFSPNTLKLWLLKKKGKLEDIECSKSFGLNINPDENISPISNKENHQTPKGAQDQKLQRKPFSSCIKLFQEHDVMALKNRVERTPFQSLKNTRSKGRSGISCPVSAAKSIDVSKCRQILDMHIKPSDTIGVQKRSWNMIVDTTSLMNKESRKALQLLQGLKGTRLIIPRFVVRELHSMNQQFSIFRRISEASLALEWIEECMMKTNWWIHIHSSVEEGSLIAPTPPASPQTQFGEESLALLGGIGSLRPVSPQSMEIPSPTVEDHILEFAVIYKRKQNNAQLVVLSEDVTFKIKCMAEGLLCEPVQEFRESLVNPFSERFLWANSSPRGQTWSCQDDVVLREKYLRLRLPLRKSSKGVASGLKLILLHNSLYGHTVQESLLKSYV. 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03460 1065 MobiDBLite consensus disorder prediction 603 653 - -
Seca10g03460 1065 MobiDBLite consensus disorder prediction 604 618 - -
Seca10g03460 1065 Gene3D - 2 128 - -
Seca10g03460 1065 MobiDBLite consensus disorder prediction 274 293 - -
Seca10g03460 1065 Pfam FHA domain 48 115 IPR000253 GO:0005515
Seca10g03460 1065 PANTHER TRANSMEMBRANE PROTEIN 18 650 1049 - -
Seca10g03460 1065 CDD FHA_PS1-like 13 129 - -
Seca10g03460 1065 Pfam PIN domain 818 983 IPR002716 -
Seca10g03460 1065 Gene3D - 810 992 - -
Seca10g03460 1065 SUPERFAMILY SMAD/FHA domain 30 127 IPR008984 GO:0005515
Seca10g03460 1065 SMART FHA_2 46 98 IPR000253 GO:0005515
Seca10g03460 1065 MobiDBLite consensus disorder prediction 714 739 - -
Seca10g03460 1065 ProSiteProfiles Forkhead-associated (FHA) domain profile. 47 98 IPR000253 GO:0005515
Seca10g03460 1065 MobiDBLite consensus disorder prediction 619 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03460 Seca-Chr10 60358027 60362253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03460 - - aprc:113859545 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03460 10 60358027 60362253 Seca10g03460 10 60358027 60362253 ECH