Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1594 ATGTCAAAGTGTGGCTGTGACGCAGTAGGCGGCCATGTTCTCATGACGCCTCGTCTCCACCCCACTCCGAGACCTTCTTCACTTTCTCTTCCATGGAAGAAACTAAGAAGCAAAACAAGACTAAAAATAACTGTAGCAGATGCGACAGGGAATAGCAGAGGTTCTTTTACTTGGGCATTGAATCAAACAGTAGGTGGGTTGTTGTTGCCACGAAGGGAAAGCTGTGAAGAGAAAGTAAGAAGCAAGAAAAGGGTGTTCTTCTTGGATGTTAATCCTCTCTGTTATACTGGAAGCACCCCCAGCTTGCACTCCTTTGGTCATTGGGTTTCTCTCTTTTTCCAACAAGTCAGCCTCAGTGACCCTGTTATTGCTGTTATTGATGGAGAAAGATGTAACGAGTATCGCCAAAAGTTATTACCTTCATATAAAGCTCATAGGAGGAAATTCTCAAAGCAATTACCTTCACAAAGATTTTCATCAGTTTCTGCTGGAAGGTCACGTCAAGTTGTCAGAGACGTCCTCAGGAAATGCAATGTGCCAGTTCTAAAAATTGAAGGCTGTGAAGCAGATGATGTTGTCGCTACACTTGTAGGTCAAGTTTTACAAAGAGGATATCGAGTGGTTATCGCTTCTCCTGATAAAGATTTCAAGCAATTGATATCTGAAGAAGTGCAAATTGTTATGCCTATGCCAGAGTTCGGCAGATGGTCTTTTTACACCCTTAAGCACTACATAGCACAATATAATTGTGATCCATGCTCGGATTTGAGTTTGCGATGCATCATGGGTGATGAAGTTGATGGTGTTCCTGGAATTCAACATGTGGCTCCTGGTTTTGGTCGAAAGACTGCCCTAAAGCTCTTAAAAAAACATGGTTCACTGGAAAATTTGTTAAATGCAGCAGCAGTAAGAACTGTAGGTAGACAGTATGCGCAAAATGCCCTTACAAAGTATGCTGATTTTCTGCGAAGGAATTATGAAATTCTTTCCTTGAGGAGGGATGTCGATGTGCAGCTTGAAGAGGAGTGGCTGTTTGACAGAGATAGCCGGAATGATTCAGTTGTTTTATCAAACTTTTTCAAACTGTTGGGAGAAACCCAGAAACTCACCAACCAAAATACATCTCATTCTTCAGATGGTTAA 1143 0.4191 MSKCGCDAVGGHVLMTPRLHPTPRPSSLSLPWKKLRSKTRLKITVADATGNSRGSFTWALNQTVGGLLLPRRESCEEKVRSKKRVFFLDVNPLCYTGSTPSLHSFGHWVSLFFQQVSLSDPVIAVIDGERCNEYRQKLLPSYKAHRRKFSKQLPSQRFSSVSAGRSRQVVRDVLRKCNVPVLKIEGCEADDVVATLVGQVLQRGYRVVIASPDKDFKQLISEEVQIVMPMPEFGRWSFYTLKHYIAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRQYAQNALTKYADFLRRNYEILSLRRDVDVQLEEEWLFDRDSRNDSVVLSNFFKLLGETQKLTNQNTSHSSDG* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1594 380 Gene3D - 249 329 - -
Vvi18g1594 380 SUPERFAMILY PIN domain-like 83 248 IPR029060 -
Vvi18g1594 380 PANTHER FLAP ENDONUCLEASE XNI 74 372 IPR038969 GO:0017108|GO:0033567
Vvi18g1594 380 Pfam 5'-3' exonuclease, C-terminal SAM fold 258 341 IPR020045 GO:0003677|GO:0003824
Vvi18g1594 380 Gene3D - 81 248 - -
Vvi18g1594 380 SMART 53exo3 83 347 IPR002421 GO:0003677
Vvi18g1594 380 FunFam 5'-3' exonuclease family protein 249 329 - -
Vvi18g1594 380 Pfam 5'-3' exonuclease, N-terminal resolvase-like domain 107 228 IPR020046 GO:0003677
Vvi18g1594 380 CDD H3TH_53EXO 261 331 IPR020045 GO:0003677|GO:0003824
Vvi18g1594 380 CDD PIN_53EXO 135 230 - -
Vvi18g1594 380 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 258 348 IPR036279 -
Vvi18g1594 380 FunFam 5'-3' exonuclease family protein 83 248 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1594 - - vvi:100250377 770