Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1931 ATGGGTGGTTCCGTTTTCACTCACTTCCTCGTTCTCCCCTCCTCTTCTACTCCTTCTCTTTCCACTCTCTTCCCATCCAAATTCCCCACCAGACCCATCAATGAATCTTTTCCCTTCACCCTTACCTGCAACCAATTCCCTTCCAAACTCACTACTTCGCGGCCTTCCCAATTCTCAGCTCCTCCTAGTTACTCATGCTCTGTAAAAAAGATAAAAGCTTCGGGAAGTCAGCAAACAGGATCCATTCGACATGGAGACAACCTTGATGCAATGAATAGCAGGAGTTTGCTGCAGAAGTTTCAGAGGAAAATGCCAACGGTATTCCTTTTCAACAAGCAATCTATGAGGAGTGGGACTTTCTTTGTGATTCGCCAAGTTCTTGTCCGCAGAGAACTCGACCTATCTGCCAAAGAGTTGCAGGAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGTGCAGTGATGCTGCGCAGGAAATTTTACCCTGCTGCTACCAAGTTCTTGCTTCAAGCAATTGAGAAATGGGATGGGGATAATCCGGATCTTGCCCAGGTTTACAACGCTCTTGGTGTGAGCTATGTCCGCGATGGGAAAGTTGACAAAGGAATTGCTCAATTTGAGACAGCTGTCAAGCTTCAACCAGGCTATGTCACAGCTTGGAACAATCTCGGTGATGCCTTTGAGAGTAAAAAAGACTACAAGTCTGCTCTGAAGTCATTTGAAGAAGTCCTACTATTTGATCCTAACAACAAGGTTGCCCGGCCTAGAAGAGATTCTTTGAAGGGACTTGTTGATGCAACCAAAGGAGTTACTGTCATCAAGTCAACAGAGAAGAAATAA 855 0.4538 MGGSVFTHFLVLPSSSTPSLSTLFPSKFPTRPINESFPFTLTCNQFPSKLTTSRPSQFSAPPSYSCSVKKIKASGSQQTGSIRHGDNLDAMNSRSLLQKFQRKMPTVFLFNKQSMRSGTFFVIRQVLVRRELDLSAKELQEQVRSGDAGATELFELGAVMLRRKFYPAATKFLLQAIEKWDGDNPDLAQVYNALGVSYVRDGKVDKGIAQFETAVKLQPGYVTAWNNLGDAFESKKDYKSALKSFEEVLLFDPNNKVARPRRDSLKGLVDATKGVTVIKSTEKK* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1931 284 ProSiteProfiles TPR repeat profile. 188 221 IPR019734 GO:0005515
Gso10g1931 284 ProSiteProfiles TPR repeat profile. 222 255 IPR019734 GO:0005515
Gso10g1931 284 Gene3D Tetratricopeptide repeat domain 144 266 IPR011990 GO:0005515
Gso10g1931 284 PANTHER TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN PYG7, CHLOROPLASTIC 117 274 - -
Gso10g1931 284 ProSiteProfiles TPR repeat region circular profile. 222 255 - -
Gso10g1931 284 Pfam Tetratricopeptide repeat 193 249 - -
Gso10g1931 284 SMART tpr_5 222 255 IPR019734 GO:0005515
Gso10g1931 284 SMART tpr_5 188 221 IPR019734 GO:0005515
Gso10g1931 284 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 117 274 - -
Gso10g1931 284 SUPERFAMILY TPR-like 150 259 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1931 Gso-Chr10 46273826 46278052 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1931 - - gmx:100785939 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1931 10 46273826 46278052 Gso10g1931 10 46273826 46278052 ECH
Gso20g1425 20 44439846 44443949 Gso10g1931 10 46273826 46278052 GST