Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3538 ATGGCTTCAATCGTCGTTTCAGACGATAACCCTAATCAACAACAACAATCCCTAATCCCAGTATTAACTGTTTTCAAGAACAATTCAATCCTCAAGAACATCATCATCCTCAACAATAACAACAACAATAACAAATACAACGATGATCAAATCCTCCTCGTTGGTCGACACCCAAATTGTAACATTGTCCTCTTTCACCCTAGCATCAGCCGTTTCCATCTTCAGATTCGATTCAATCCTTCTTCCCGCTCTATTTCTCTTCTCGATTTATCTTCTGTGCATGGAACATGGGTGTGTGGTAGAAAGCTTGAACATGGTGTGAGCGTTGATTTGAAGGAAGGTGATACCTTTCAGCTTGGGAGTTCAAGTAGGGTTTATCTTCTTCAATTTGTATCTCAATTCGATGATGTGGATGCATTAAAGAACATTGGTTCTTTAGGTTGTGATGATAAAAGGAAGGACCAGTCTAATGATGAAACATTTGAAGATGAAAATGATTCTTTTGGAACTGAGACATCATGTTGTAATGGTGAAAATAAACTCTGTGGATGTCACTTCTGTTTGCTATCACCACCTTACACACAATCAGTTGACGAAACTGATAACATACAGATGGGTGAAGCTTGTCCCGAAGTGGAGATGCCGGGAGAGACTAACTTGTTTTGCACATTGAGGGAATGTTTTCAACAAAACATATGTATTCCAGTTGCGGAAGCAGTCCAAGGCTCCAAATTGCACCAACAATCTTCTGCGGAAAAGCAGTTGATTGATCCTGAATCATCTTTTGGGGAAAAAGGCGACGGTGCTGTGGATGAGGTGCCTAAAGAATCTGAATTTGAAGGCACATTCGAATATATTGTAACTACTGGAGGAAGAGTCTTTAATTCTGAGGACATGCCTTGTTCTGAATCTCATCAAACCAATACTAATGAGGAAGTATCTGTGGATTCACTCTCTGATGGAGAAAAACAAGGTAGTTGCGGTGAAGAGTATGAGTCAGAGTTGCAGAATCTGAATGCTAATTCTTGTCACAAGCAACAGTATTCACCGGATGAAATAGTTGAAGATATTGGAAAGCAATGCATTGAAAATATGGATCCTGCATCTTCTGAAGAAAATGGTGTAGCTGCATTAAGTGTAACACCAAAAGAACACAAATTAGAATTCTTCTCTGAAGAAAATGATATGATTGACGATGTTTTATCTAGTGTGGCAAGATTTTTCAATTCTGAAAACACATCTTCACTAGTTAAAGAAACAATTCATCATGTAACCAATTTTCAACAAATCAATACTGTTGAAGAAGTTGCTGCTGTTGATTCGTTATCGGATGAAGAAAAGGAAAATAAATGTGACGTGGAGTTCAAGGCATACCTCAATATCAAACCTTGTGATGAAGAAGGTAACTCACTGGTTGAAACAGTTGAAGAAACTGTGAAATCCTTTCAGACAGAGTCAGTTAATCCTTTATCCGTAAACACATATTCACTAGTTGAAGATTCAATTCCTGTAACCAATTTTCAACTAATCAATATTGTTGACGAAGTTGCTACTGTTGATTCGTTATCGGATGAAGAAAAGGAAAATGAATGTGATGAGGAGTTCAAGGCATACCTCTATGTCAAACCTTGTGATGAAGGTAGCTCACTGGATGAAACAGTTGAAGAAACTGTGAAATCCTTCCAGACAGAGTCACTTAATCCTTCATCCGGAAACACATCTTCACTAGTTGAAGAAGCGATTCCTGTAACCAATTTTCAACTAATCAATATTGTTGAAGAAGTTGCTACTGTCGATTCGTTATCAAATGAAGAAAAGGAAAATGAATGTGATGAGGAGTTCAAGGCATACCTCTATGTCAAACCTTGTGATGAAGAAGGTAACTCACTAGATGAAACAGTTGAAGAAACTGTGAAATCCTTTCAGACAGAGTCACTTAATCCTTCAGTGACTCAGGAAACTGATTTAGAGATTACAGAGAAGAAAGAGAATCAAACCCTGCAATCTCTCGTTGCTGTGGCTGGATGCTTTGATGTGAAATTCCATGAAAACTGTGTAGAAGAATCAGTAGAGGGAAGCTTAACCCTTGGTAGTGATATTTTGTCAAGAAGAGATAAGGCTGCGAGTGCACCTCAGGATCGAACTCGGAAGAGCAGATTATTGAACACACCTGATGTTGACACTAAATTTGTAATGAGTAATTTGAAGGATATCAATATCATAAATAAACCAATGCCACAGAATATTTTCTCTGACTTGGATGAAGAAGAAATGTTCACTCCAAATAAGGAAAACTCAAGCCCCACAAATACCTTTCACTCGCAGTTTATGAGAAAGAAAGGTGTGCTAGAAGAAAGTAAAAGTTCCAAGTCACAAAGGGCACATAATTTGAAGGCTAGTTTTAGTTCCATCATCTATTCAGCTGAAAGATGTACAAGTGCAATTTCAAACAAAGAGAACCAGACTCCGAAGTCACAAAGGGCGCATAATTTGAAGGCTAGTTTTAGTCCCATCATCTATTCAGCTGAAAGAAGTACAAGTGCAATTTCAAACAAAGAGAACCTGACTCCAAGAGAAGCACGTGAATGGAAGTCACAAAGATCACATAACTTGAGGGCTAGTTTTAGTCCCATCATCTATTCAGCTGAAAGAAGTGCAAGTGCAATTTCAAACAAAGAGAACCTGACTCCAAAAGAAGCACTAGAATGGATGTCAGGTAGAAATCCTCTTGAGTGTCGCAATACTATGGAATTAAGAAAGAAGAGAGTGGAACGGATGCCCTTACAATCACTAATCAGTTCTGGAGGCAATCACAATTCGAATTCTAGTCCTTTTTCTTCTAGTCCTTTTTCAGCTGCAAAATCCATTCTTGGTGTCACTGTCAGATCCAGCAATTGTGGACATATTTCAGACAAGCATGCCCAGCCATCTCGTATTAGTGCAGAACGAAAGAGGAGCTGGGACTTGGTTGTAGACACTTCTTCTCTTCTGAATAAGGAGTCAAGAAAGGCTTTGCAGCTTCTACAAGGTCTCAAGAGGACTCGTTTAATCATTCCACAATCAGTCATAAGAGAATTGGGAAGCATGAAGCAACAAATTGGAATTTTTAGAAGGATTTCAGAGGCTGCTTTGGCCTTGGAATGGATTGAAGAATGCATAGGGAAGACAAAGTGGTGGATTCATATCCAAAGCTCAATGGAGGATGAATTCAGGCTAATTGCTCCAACACCTCCTACTCAGTTTAATGAAGATGTCCTTGATTGTGCCCTTCAATATAGAAGAAAAGATAATGTTGGACAAATTGTCCTTCTTAGTGATGACGTCAACTTGAAAATCAAATCCATGGCAAAGGGGTTGCTATCTGAGACAGTGCAGCAATTTCGTCAGAGTTTAGTGAACCCTTTCTCTGAGAGGTTTATGTGGGCCAACAGCTCTCCTCGAGGACTGACTTGGTCTTGCCGAGATGATGTGGTTTTAAGGGAGAAATATTGCTGTTTGCCATCAAAGGCTGGTTTGAAGCTGCTTGCTACTTAA 3534 0.3911 MASIVVSDDNPNQQQQSLIPVLTVFKNNSILKNIIILNNNNNNNKYNDDQILLVGRHPNCNIVLFHPSISRFHLQIRFNPSSRSISLLDLSSVHGTWVCGRKLEHGVSVDLKEGDTFQLGSSSRVYLLQFVSQFDDVDALKNIGSLGCDDKRKDQSNDETFEDENDSFGTETSCCNGENKLCGCHFCLLSPPYTQSVDETDNIQMGEACPEVEMPGETNLFCTLRECFQQNICIPVAEAVQGSKLHQQSSAEKQLIDPESSFGEKGDGAVDEVPKESEFEGTFEYIVTTGGRVFNSEDMPCSESHQTNTNEEVSVDSLSDGEKQGSCGEEYESELQNLNANSCHKQQYSPDEIVEDIGKQCIENMDPASSEENGVAALSVTPKEHKLEFFSEENDMIDDVLSSVARFFNSENTSSLVKETIHHVTNFQQINTVEEVAAVDSLSDEEKENKCDVEFKAYLNIKPCDEEGNSLVETVEETVKSFQTESVNPLSVNTYSLVEDSIPVTNFQLINIVDEVATVDSLSDEEKENECDEEFKAYLYVKPCDEGSSLDETVEETVKSFQTESLNPSSGNTSSLVEEAIPVTNFQLINIVEEVATVDSLSNEEKENECDEEFKAYLYVKPCDEEGNSLDETVEETVKSFQTESLNPSVTQETDLEITEKKENQTLQSLVAVAGCFDVKFHENCVEESVEGSLTLGSDILSRRDKAASAPQDRTRKSRLLNTPDVDTKFVMSNLKDINIINKPMPQNIFSDLDEEEMFTPNKENSSPTNTFHSQFMRKKGVLEESKSSKSQRAHNLKASFSSIIYSAERCTSAISNKENQTPKSQRAHNLKASFSPIIYSAERSTSAISNKENLTPREAREWKSQRSHNLRASFSPIIYSAERSASAISNKENLTPKEALEWMSGRNPLECRNTMELRKKRVERMPLQSLISSGGNHNSNSSPFSSSPFSAAKSILGVTVRSSNCGHISDKHAQPSRISAERKRSWDLVVDTSSLLNKESRKALQLLQGLKRTRLIIPQSVIRELGSMKQQIGIFRRISEAALALEWIEECIGKTKWWIHIQSSMEDEFRLIAPTPPTQFNEDVLDCALQYRRKDNVGQIVLLSDDVNLKIKSMAKGLLSETVQQFRQSLVNPFSERFMWANSSPRGLTWSCRDDVVLREKYCCLPSKAGLKLLAT* 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3538 1177 MobiDBLite consensus disorder prediction 299 321 - -
Mtr1g3538 1177 Gene3D - 4 132 - -
Mtr1g3538 1177 Pfam FHA domain 53 120 IPR000253 GO:0005515
Mtr1g3538 1177 PANTHER FHA DOMAIN-CONTAINING PROTEIN PS1 850 1175 - -
Mtr1g3538 1177 PANTHER FHA DOMAIN-CONTAINING PROTEIN PS1 7 831 - -
Mtr1g3538 1177 Pfam PIN domain 989 1124 IPR002716 -
Mtr1g3538 1177 Gene3D - 984 1132 - -
Mtr1g3538 1177 CDD FHA 47 129 IPR000253 GO:0005515
Mtr1g3538 1177 SMART FHA_2 51 103 IPR000253 GO:0005515
Mtr1g3538 1177 MobiDBLite consensus disorder prediction 258 276 - -
Mtr1g3538 1177 PANTHER TRANSMEMBRANE PROTEIN 18 850 1175 - -
Mtr1g3538 1177 PANTHER TRANSMEMBRANE PROTEIN 18 7 831 - -
Mtr1g3538 1177 MobiDBLite consensus disorder prediction 297 331 - -
Mtr1g3538 1177 CDD PIN_Smg5-6-like 990 1130 - -
Mtr1g3538 1177 ProSiteProfiles Forkhead-associated (FHA) domain profile. 52 103 IPR000253 GO:0005515
Mtr1g3538 1177 MobiDBLite consensus disorder prediction 254 276 - -
Mtr1g3538 1177 SUPERFAMILY SMAD/FHA domain 31 138 IPR008984 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3538 - - mtr:MTR_1g096000 2258.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3538 1 46956409 46961259 Mtr1g3538 1 46956409 46961259 ECH