Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3540 ATGAAATTGAAGATGAGTGGTTCCACTTCCACCTTCACTCATTTCCCTTACTCTTCTCCTTCTCTTTCCTCTATCTTCCCATCCAAATCCACTTTTCAACCTCTTCCCTCTTCTAAACTCACCACTTCATCACCATGCTCATTCAAAAAGATTAAAGCCTTGGGAATTCAGCAAATAGGATCCACTTCACATGGAGACAACCTTGATTCAGTCAAGAGTAGGATTCTACTCCAGATGTTTCAAAGGGCAATGCCAATGGAACCCCTTATAACCATTTTCACAAAACAATCCGAGTTGAATGACTTCTCAGTGGAAAATCTTCAAGATTGGAGAAAGTCATCCAAATGGGTTTCAGCATTCTTGTTTGCACAAACTATGTCAGTTATTTCTCCTGATGTTTCATATGCAAGTGACTCAGTGAAGATAAATGAGATGTATCAGGTCGGGGAGTTGTTTGACCTAGGAATCCAACTAATATACTTGCTACTGCTGTTGGGTTTGCTCGGGGCTGGGACTTACTACGTGATTCGCCAAGTTCTTGTCCGCAGAGAGCTTGACCTTTCTGCTAAAGAGTTGCAAGAGCAAGTCAGAAGCGGTGATGCAAGTGCGACTGAGCTGTTTGAACTCGGTGCAGTGATGCTGCGGAGGAAATTTTACCCAGCTGCTACCAAGTTTTTGCTTCAAGCAATTGATAAATGGGATGGAGAAAGTCAGGATCTTGCACAGGTTTACAACGCTCTTGGTGTCAGTTATGTTCGTGACGGGAAGCTTGAAAAAGGAATTGCTCAATTTGAGACAGCTGTGAAGATTCAACCAGGCTATGTCACAGCATGGAACAATCTTGGTGATGCATATGAAAGTAAAAAAGAATATCCGTCTGCACTGAAGGCATTTGAAGAAGTGCTTCTATTTGATCCTAACAACAAGATTGCACGGCCCAGGAGAGATTCTTTGAAGGAACTTGTTGGAATGACGCAAGGTGTTACTGTCAGATATAGGGAGAAGAAATGA 1011 0.4243 MKLKMSGSTSTFTHFPYSSPSLSSIFPSKSTFQPLPSSKLTTSSPCSFKKIKALGIQQIGSTSHGDNLDSVKSRILLQMFQRAMPMEPLITIFTKQSELNDFSVENLQDWRKSSKWVSAFLFAQTMSVISPDVSYASDSVKINEMYQVGELFDLGIQLIYLLLLLGLLGAGTYYVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVMLRRKFYPAATKFLLQAIDKWDGESQDLAQVYNALGVSYVRDGKLEKGIAQFETAVKIQPGYVTAWNNLGDAYESKKEYPSALKAFEEVLLFDPNNKIARPRRDSLKELVGMTQGVTVRYREKK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3540 336 PANTHER TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN PYG7, CHLOROPLASTIC 28 329 - -
Mtr1g3540 336 Pfam Tetratricopeptide repeat 246 305 - -
Mtr1g3540 336 SUPERFAMILY TPR-like 200 313 IPR011990 GO:0005515
Mtr1g3540 336 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 28 329 - -
Mtr1g3540 336 ProSiteProfiles TPR repeat profile. 241 274 IPR019734 GO:0005515
Mtr1g3540 336 ProSiteProfiles TPR repeat region circular profile. 275 308 - -
Mtr1g3540 336 SMART tpr_5 241 274 IPR019734 GO:0005515
Mtr1g3540 336 SMART tpr_5 275 308 IPR019734 GO:0005515
Mtr1g3540 336 ProSiteProfiles TPR repeat profile. 275 308 IPR019734 GO:0005515
Mtr1g3540 336 Gene3D Tetratricopeptide repeat domain 178 326 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3540 227 306 Glycosyltransferase AT3G11540 33.750 7.27e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3540 - - ahf:112712552 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3540 1 46977177 46980830 Mtr1g3540 1 46977177 46980830 ECH