Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07152 ATGGGTGCTTCCAATTTCACTCACTTCCTCGTTCTTCCATATTCTTCTTCTCCTTCTCTTCCCACACTCTTTCCATCCAAAATTTCCACCAAAACCACCTATGAATCTGTTTCCTCCACCCTTATCTGCAAGCAATTTCCTTGCACACTTGCTACTTCATGGTCTTCCCAATCCGCAGCTCCTCATGGTCACTCATGCTCTGTAAAAAAGATGAAAGCCTTGGGAATTCAGCAAACAGGATCCACTCTACCTGGAGACAACCTTGATGCAAGGAAGAGTAGGATTGTGCTTCAGATGTTTCAAAGGGCAATGCCAATGGAATCTCTTAATACCTTTATCACAAGACAACCTGAGATGAATGACTTTATGACCGAGGATCTTGAAGATGTGGGAAGGTCATCCAAATGGATTTCAGCATTCTTGTTTGGACAAACTATATCAGTGATTTCTCCTGATGTTTCATATGCAAGTGACTCAATGAAGATAAATGAGATATATGAGGTTGGAGAGCTGTTTGATCTAGGGATCCAACTCATATACTTGCTACTGTTATTGGGTTTGCTAGGGTTTGGGACTTTCTTTGTGATTCGCCAAATTCTTGTCCGTAGAGAACTTGACCTTTCTGCCAAGGAGTTGCAGGACCAAGTAAGAAGTGGTGATGCAAGTGCAACCGAGCTTTTTGAACTTGGTGCAGTGATGCTGCGGAGGAAATTTTACCCAGCTGCTACCAAGTACTTGCTTCAAGCAATTGAGAAATGGGATGGAGAAAATCAGGATCTTGCTCAGGTTTACAATGCTCTTGGTGTCAGCTATGTCCGTGATGGGAAGGTTGACAAAGGAATTGCTCAGTTTCAGACAGCTGTAAAGCTTCAACCAGGTTATGTCACAGCATGGAATAATCTTGGTGATGCCTATGAGAATAAAAAAGACTATACGTCTGCTCTCAAGGCATTTGAAGAAGTGCTACTATTTGATCCTAACAACAAAATTGCAAGGCCCAGGAGAGATGCCTTGAAGGATATGATTCAAATGTACAAAGGAGCTCCTATCAAATTTGAAGACTAA 1065 0.4207 MGASNFTHFLVLPYSSSPSLPTLFPSKISTKTTYESVSSTLICKQFPCTLATSWSSQSAAPHGHSCSVKKMKALGIQQTGSTLPGDNLDARKSRIVLQMFQRAMPMESLNTFITRQPEMNDFMTEDLEDVGRSSKWISAFLFGQTISVISPDVSYASDSMKINEIYEVGELFDLGIQLIYLLLLLGLLGFGTFFVIRQILVRRELDLSAKELQDQVRSGDASATELFELGAVMLRRKFYPAATKYLLQAIEKWDGENQDLAQVYNALGVSYVRDGKVDKGIAQFQTAVKLQPGYVTAWNNLGDAYENKKDYTSALKAFEEVLLFDPNNKIARPRRDALKDMIQMYKGAPIKFED. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07152 354 ProSiteProfiles TPR repeat profile. 295 328 IPR019734 GO:0005515
Seca8g07152 354 SUPERFAMILY TPR-like 221 332 IPR011990 GO:0005515
Seca8g07152 354 ProSiteProfiles TPR repeat region circular profile. 295 328 - -
Seca8g07152 354 Pfam Tetratricopeptide repeat 266 325 - -
Seca8g07152 354 Gene3D Tetratricopeptide repeat domain 202 349 IPR011990 GO:0005515
Seca8g07152 354 SMART tpr_5 261 294 IPR019734 GO:0005515
Seca8g07152 354 SMART tpr_5 295 328 IPR019734 GO:0005515
Seca8g07152 354 ProSiteProfiles TPR repeat profile. 261 294 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07152 Seca-Chr8 167745887 167749896 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07152 - - ahf:112712552 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07152 8 167745887 167749896 Seca8g07152 8 167745887 167749896 ECH