Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2218 . . . . Aev04g1829 . . . . . . . . . . . . . . . . . . Gma09g00795 . . . . . . . . . . . . . . . . . . . . Phac9g03577 . . Psa1g0463 . . . . . . . . . . . . . . . Vra5g0446
Pvu9g2219 . . . . . . . . . . . Apr1g2516 . . . . . Cca08g01247 . . . . Gma15g01847 . Gso15g1601 . . . . . . . . Lasa1g04443 . . . . . Mal4g2642 Mepo6g02096 Mesa5g02447 . Mtr2g1829 Phac9g03578 . . Psa1g0460 . Pumo2g01914 Rops11g01993 Seca6g03570 Spst9g02701 Ssu1g1733 . . . . Vian4g00484 Vifa1g04204 . Viun9g00660 Vivi4g01185 Vra5g0447
Pvu9g2220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu10g00640 . . .
Pvu9g2221 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu10g00639 . . Vra5g0448
Pvu9g2222 . . . Aed4g1091 . . Ahy3g2144 . . . . . . . . . . . . Dod03g1713 . . Gma15g01846 . Gso15g1600 . . . Lal4g1430 . Lan14g0057 . Lapu9g00288 . . . . . Lja6g1878 . . . . . . Phco7g02556 . . Pste2g01044 . . . Spst9g02702 . . . . . . . Vimu10g00636 . . Vra5g0449
Pvu9g2223 . . . . . . . . . . . Apr1g2515 . . . . . Cca08g01248 . Dod03g1711 . . . . . . . . Lal4g1433 . Lan14g0059 . . . . . . . Lja6g1879 Mal4g2644 Mepo6g02094 . . Mtr2g1827 . . . Psa1g0459 . Pumo2g01908 . . . Ssu1g1730 . . . . . Vifa1g04205 . . . .
Pvu9g2224 . . . Aed4g1089 . . . . . . . Apr1g2514 . . . . . . . Dod03g1710 . . Gma15g01845 . Gso15g1599 . Lal17g1420 . Lal4g1434 Lan15g0235 Lan14g0060 . Lapu9g00290 Lasa1g04444 . . . . Lja6g1881 Mal4g2654 Mepo6g02092 Mesa5g02453 . Mtr2g1826 Phac9g03582 Phco7g02558 . Psa1g0458 Pste2g01046 . . . Spst9g02704 Ssu1g1729 . Tpr5g2785 . . . . Vimu10g00635 . . Vra5g0450
Pvu9g2225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02560 . . . . . . Spst9g02705 . . . . . . . . . . .
Pvu9g2226 . . . Aed4g1088 . . . . . . . Apr1g2513 . . . . . Cca08g01250 . . . . Gma15g01843 . Gso15g1597 . . . . . . . Lapu9g00292 . . . . . Lja6g1882 Mal4g2655 Mepo6g02088 Mesa5g02456 . Mtr2g1825 . Phco7g02561 . . Pste2g01048 Pumo2g01904 . . Spst9g02707 Ssu1g1728 . . . . Vian4g00473 Vifa1g04210 Vimu10g00634 Viun9g00652 . Vra5g0451
Pvu9g2227 . . . . . . . . . . Amo03g1711 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu9g2218 Chr9 31768480 31776783 +
Aev Aev04g1829 Chr04 14541099 14542793 -
Gma Gma09g00795 Chr09 10721144 10721913 +
Phac Phac9g03577 Chr9 34880915 34883298 +
Psa Psa1g0463 Chr1 27998169 28000232 +
Vra Vra5g0446 Chr5 4669608 4672309 +
Pvu Pvu9g2219 Chr9 31774477 31776391 +
Apr Apr1g2516 Chr1 34766614 34769274 -
Cca Cca08g01247 Chr08 36902362 36907209 +
Gma Gma15g01847 Chr15 22940651 22942979 -
Gso Gso15g1601 Chr15 22837412 22839896 -
Lasa Lasa1g04443 Chr1 740432675 740436377 +
Mal Mal4g2642 Chr4 72116890 72128380 +
Mepo Mepo6g02096 Chr6 24960740 24965086 -
Mesa Mesa5g02447 Chr5 42779950 42790926 +
Mtr Mtr2g1829 Chr2 21622334 21627178 -
Phac Phac9g03578 Chr9 34884001 34886427 +
Psa Psa1g0460 Chr1 27920596 27925930 -
Pumo Pumo2g01914 Chr2 36642063 36644791 -
Rops Rops11g01993 Chr11 32420440 32424448 +
Seca Seca6g03570 Chr6 102879742 102883913 +
Spst Spst9g02701 Chr9 61076684 61087486 +
Ssu Ssu1g1733 Chr1 42921401 42924279 -
Vian Vian4g00484 Chr4 5723678 5725607 -
Vifa Vifa1g04204 Chr1 648929825 648931778 +
Viun Viun9g00660 Chr9 4910448 4912766 -
Vivi Vivi4g01185 Chr4 37824959 37829270 -
Vra Vra5g0447 Chr5 4673041 4675276 +
Pvu Pvu9g2220 Chr9 31784247 31785329 -
Vimu Vimu10g00640 Chr10 5508604 5509485 +
Pvu Pvu9g2221 Chr9 31796550 31798028 -
Vimu Vimu10g00639 Chr10 5500946 5501710 +
Vra Vra5g0448 Chr5 4675756 4677616 -
Pvu Pvu9g2222 Chr9 31802947 31806830 -
Aed Aed4g1091 Chr4 10226670 10229757 +
Ahy Ahy3g2144 Chr3 63848231 63850247 +
Dod Dod03g1713 Chr03 24653843 24657282 +
Gma Gma15g01846 Chr15 22919125 22931048 +
Gso Gso15g1600 Chr15 22815876 22828272 +
Lal Lal4g1430 Chr4 18471120 18474328 -
Lan Lan14g0057 Chr14 809241 812296 -
Lapu Lapu9g00288 Chr9 2866477 2868051 -
Lja Lja6g1878 Chr6 46049869 46053414 -
Phco Phco7g02556 Chr7 44380205 44388135 -
Pste Pste2g01044 Chr2 11064500 11068067 -
Spst Spst9g02702 Chr9 61141173 61143757 -
Vimu Vimu10g00636 Chr10 5488796 5492367 +
Vra Vra5g0449 Chr5 4713395 4716882 -
Pvu Pvu9g2223 Chr9 31811845 31813557 -
Apr Apr1g2515 Chr1 34763505 34765400 +
Cca Cca08g01248 Chr08 36940871 36943881 -
Dod Dod03g1711 Chr03 24620589 24625303 +
Lal Lal4g1433 Chr4 18486042 18487898 -
Lan Lan14g0059 Chr14 816890 820997 -
Lja Lja6g1879 Chr6 46055081 46057330 +
Mal Mal4g2644 Chr4 72147071 72148906 -
Mepo Mepo6g02094 Chr6 24940816 24943063 +
Mtr Mtr2g1827 Chr2 21604572 21607544 +
Psa Psa1g0459 Chr1 27909026 27917453 +
Pumo Pumo2g01908 Chr2 36570584 36573391 +
Ssu Ssu1g1730 Chr1 42913018 42914907 +
Vifa Vifa1g04205 Chr1 648949279 648951150 -
Pvu Pvu9g2224 Chr9 31820552 31825164 -
Aed Aed4g1089 Chr4 10215508 10224422 +
Apr Apr1g2514 Chr1 34756908 34762383 +
Dod Dod03g1710 Chr03 24607008 24614201 +
Gma Gma15g01845 Chr15 22848609 22854496 +
Gso Gso15g1599 Chr15 22754152 22760685 +
Lal Lal17g1420 Chr17 15659655 15666106 -
Lal Lal4g1434 Chr4 18501000 18505739 -
Lan Lan15g0235 Chr15 2640190 2646441 +
Lan Lan14g0060 Chr14 823612 828450 -
Lapu Lapu9g00290 Chr9 2876442 2881143 -
Lasa Lasa1g04444 Chr1 740518715 740522410 -
Lja Lja6g1881 Chr6 46090376 46095638 -
Mal Mal4g2654 Chr4 72487083 72492006 -
Mepo Mepo6g02092 Chr6 24911187 24917128 +
Mesa Mesa5g02453 Chr5 42922564 42927877 -
Mtr Mtr2g1826 Chr2 21578416 21584388 +
Phac Phac9g03582 Chr9 34935472 34939892 -
Phco Phco7g02558 Chr7 44391525 44395297 -
Psa Psa1g0458 Chr1 27889279 27900605 +
Pste Pste2g01046 Chr2 11076076 11081536 -
Spst Spst9g02704 Chr9 61148961 61152722 -
Ssu Ssu1g1729 Chr1 42903449 42909093 +
Tpr Tpr5g2785 Chr5 49980114 49983148 +
Vimu Vimu10g00635 Chr10 5479281 5483198 +
Vra Vra5g0450 Chr5 4722172 4726452 -
Pvu Pvu9g2225 Chr9 31827856 31829385 -
Phco Phco7g02560 Chr7 44399794 44401323 -
Spst Spst9g02705 Chr9 61166008 61167519 +
Pvu Pvu9g2226 Chr9 31849595 31849984 -
Aed Aed4g1088 Chr4 10199744 10199992 +
Apr Apr1g2513 Chr1 34751565 34751957 +
Cca Cca08g01250 Chr08 37033228 37033656 -
Gma Gma15g01843 Chr15 22722858 22723256 +
Gso Gso15g1597 Chr15 22631452 22632167 +
Lapu Lapu9g00292 Chr9 2894862 2895266 -
Lja Lja6g1882 Chr6 46099736 46100134 -
Mal Mal4g2655 Chr4 72571684 72572052 -
Mepo Mepo6g02088 Chr6 24867903 24868304 +
Mesa Mesa5g02456 Chr5 42963997 42964434 -
Mtr Mtr2g1825 Chr2 21549435 21549900 +
Phco Phco7g02561 Chr7 44409438 44409845 -
Pste Pste2g01048 Chr2 11179922 11180332 -
Pumo Pumo2g01904 Chr2 36512653 36512973 +
Spst Spst9g02707 Chr9 61174419 61174823 -
Ssu Ssu1g1728 Chr1 42837954 42838367 +
Vian Vian4g00473 Chr4 5590526 5590939 +
Vifa Vifa1g04210 Chr1 650214480 650214863 -
Vimu Vimu10g00634 Chr10 5458955 5459368 +
Viun Viun9g00652 Chr9 4837765 4838211 +
Vra Vra5g0451 Chr5 4734994 4735694 -
Pvu Pvu9g2227 Chr9 31889138 31892189 +
Amo Amo03g1711 Chr03 49149531 49151159 -