Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1730 ATGAAGAGCCTCCATGTGAAGCGTCACTTCAGCATCCTCACCTCCATTGCTCCATCCCCCACCGAATCCCAGATCCTCCACCACTGCAAACTCGGCGCTGTCCCCGAAGCCCTCGCCCTCCTCAACTCCGAAGCCCAAGCCCAAGCCCAAACCCTCAACCCCGCTCTCAAGCCCGTCTTCTACGCCTCCCTCCTCCAAGCCTGCACCAAAGCCCGCTCCTTCCTCCACGGCACCCACCTCCACGCCCACGTCCTCAAATCCGGCCTCCTCGCCGACCGCTTCGTCGCCAACAGCCTCCTCTCCCTCTACTTCAAACTCTCCCCGCACTTCTCCCAGGCCCGCACCCTCTTCGACGGGCTTTCCGTCAAAGACGTCATTGCCTGGACCTCCATCATCTCCGGCTACGTCCAAAAAGCCCAGCCCAACAGCGCCCTCCGCCTCTTCCTCCAAATGCTGGGCCTCGGCGTCGAGCCCAACGCCTTCACCCTCTCCTCCTGCCTCAAGGCCTGCTCCCAGCTCGAAAACCTTCCCCTCGGTAGGTCCCTCCACGGCGTCGTCGCCACGCGCGGGTTCGCCTCCAACCGCGTCGTCGCGTGCGCCTTGATCGACGTGTACGGGAGGACGCGCGTGGTGGAGGACGCGGTGAGGGTGTTCGACGAGTTGCCCGAGCCGGACCCCGTGTGCTGGACGGCCGTTATCTCGACGTTAGCGCGCAACGACAGGTTCGGGGACGCGGTGGGGTTGTTTTCCGTCATGCATAACGGGGGTCTGGGGTTGGAGGTTGACGGGTTCACGTTCGGGACGTTGTTGAACGCGTGCGGGAACTTGGGGTGGTTGAGGATGGGGAAGGAGGTGCACGGGAAGGTTGTTACGTTGGGGATGTGCGGGAATGTGGTTGTGGAGAGTAGCTTGTTGGATATGTATGGGAAGTGCGGTGAGGTTGGGTGTGCGAGGGTTGTGTTTGATGGGTTGGAGGGGAGGAATTGGGTGTCGTGGACTGCTATGCTTGGGGTGTATTGTCACAATGGTGAGTGTGAGAGTGTGCTTGGGCTTGTTAGGGAGTGGGGGGTGGCGGATGTTTATAGTTTTGGGACGATTATTCGTGCGTGTTCGGGGCTGGCTGCAGTGAGGCAGGGGAAGGAGGTGCATTGTCAGTATGTGAGGAAGGGTGGGTGGAGGGATGTGGTGGTGGAGTCTGCTTTGGTTGATTTGTACGCCAAGTGCGGGAGTGTGGATTTCGCATATAGGTTGTTTTTGAGGATGGAGGTGAGGAATTTGATCACGTGGAACGCGATGATTGGGGGGTTTGCGCAGAATGGGAGAGGGTGGGAGGGGGTGGAGTTGTTTGAAGAGATGGTGAGGGAGGGGGTGAGGCCGGATGGCATCAGTTTTGTGAATGTTCTTTTTGCGTGTAGTCACAATGGTTTGGTTGATCAGGGGAGGAGGTATTTTGATTTGATGAGGAGGGAGTATGGGATTAGGCCTGGGGTGGTGCATTACACTTGCTTGATTGATCTTCTGGGACGGGCTGAGTTGATAGAGGAGGCTGAGAGTTTGTTGGAGAGTGCTGATTGCAGGTATGATCATTCGCTCTGGGCGGTTCTGCTTGGAGCCTGCACTAAGTGTTCGGACTATGTCACGGCCGAACGCGTTGCGAAAAAGATGATTCAGCTGGAGCCTGGGTTCCATCTGAGTTATGTGCTGCTTGGTAACATTTATAGGGCGGTTGGCAGGTGGAATGAGGCTCTGGAGATCAGGAAGTTGATGGAGGAAAGAGGGGTTAAGAAGATGCCTGGCAAGAGCTGGATTGAGAGTGAGAAGCGAAAGGGTTCTCCTCGTTTTGATTTGGCCAATATGAGCAGTGTTCCAAGCATGGGAGAGGCTGTGTGA 1890 0.573 MKSLHVKRHFSILTSIAPSPTESQILHHCKLGAVPEALALLNSEAQAQAQTLNPALKPVFYASLLQACTKARSFLHGTHLHAHVLKSGLLADRFVANSLLSLYFKLSPHFSQARTLFDGLSVKDVIAWTSIISGYVQKAQPNSALRLFLQMLGLGVEPNAFTLSSCLKACSQLENLPLGRSLHGVVATRGFASNRVVACALIDVYGRTRVVEDAVRVFDELPEPDPVCWTAVISTLARNDRFGDAVGLFSVMHNGGLGLEVDGFTFGTLLNACGNLGWLRMGKEVHGKVVTLGMCGNVVVESSLLDMYGKCGEVGCARVVFDGLEGRNWVSWTAMLGVYCHNGECESVLGLVREWGVADVYSFGTIIRACSGLAAVRQGKEVHCQYVRKGGWRDVVVESALVDLYAKCGSVDFAYRLFLRMEVRNLITWNAMIGGFAQNGRGWEGVELFEEMVREGVRPDGISFVNVLFACSHNGLVDQGRRYFDLMRREYGIRPGVVHYTCLIDLLGRAELIEEAESLLESADCRYDHSLWAVLLGACTKCSDYVTAERVAKKMIQLEPGFHLSYVLLGNIYRAVGRWNEALEIRKLMEERGVKKMPGKSWIESEKRKGSPRFDLANMSSVPSMGEAV 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1730 629 MobiDBLite consensus disorder prediction 600 629 - -
Ssu1g1730 629 Pfam PPR repeat family 123 170 IPR002885 -
Ssu1g1730 629 Pfam PPR repeat family 425 471 IPR002885 -
Ssu1g1730 629 Gene3D Tetratricopeptide repeat domain 466 561 IPR011990 GO:0005515
Ssu1g1730 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Ssu1g1730 629 SUPERFAMILY TPR-like 514 615 IPR011990 GO:0005515
Ssu1g1730 629 TIGRFAM PPR: pentatricopeptide repeat domain 127 160 IPR002885 -
Ssu1g1730 629 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Ssu1g1730 629 TIGRFAM PPR: pentatricopeptide repeat domain 227 256 IPR002885 -
Ssu1g1730 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Ssu1g1730 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Ssu1g1730 629 Pfam E motif 546 604 IPR046848 -
Ssu1g1730 629 Gene3D Tetratricopeptide repeat domain 182 253 IPR011990 GO:0005515
Ssu1g1730 629 PANTHER OS07G0578800 PROTEIN-RELATED 14 610 IPR045215 GO:0003723|GO:0009451
Ssu1g1730 629 Pfam PPR repeat 200 222 IPR002885 -
Ssu1g1730 629 Pfam PPR repeat 498 521 IPR002885 -
Ssu1g1730 629 Pfam PPR repeat 227 256 IPR002885 -
Ssu1g1730 629 Pfam PPR repeat 330 354 IPR002885 -
Ssu1g1730 629 Pfam PPR repeat 264 293 IPR002885 -
Ssu1g1730 629 PANTHER OS06G0611200 PROTEIN 14 610 - -
Ssu1g1730 629 Gene3D Tetratricopeptide repeat domain 255 355 IPR011990 GO:0005515
Ssu1g1730 629 Gene3D Tetratricopeptide repeat domain 21 181 IPR011990 GO:0005515
Ssu1g1730 629 Gene3D Tetratricopeptide repeat domain 356 465 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1730 Ssu-Chr1 42913018 42914907 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1730 61 604 Glycoside Hydrolase AT3G49170 35.018 3.58e-111 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1730 - - gmx:100795078 1034.63