Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02094 ATGAAGAAGCTCCACCACCTCCACGTTCTTCCCTTGAAGCAAGATCACAGTTTCATCTCCACCTCCTCTCAAATCCTCCACCACCTAAAAACCGGCTCCCTCACCGACGCAATCCACCTCCTCAACACATCACAACCATCCCTCTCTCTAAAACCAGTCATCTACGCTTCCCTCCTTCAAACCTCCGTCAAAACCAACTCATTCCACCACGGCGCCTCCGTCCACGCTCACGTCCTCAAATCCGGTCTCCATTCCGACCGCTTCGTCGGCAACAGCCTCCTTACTCTTTACTTTAAATTAAACCCCGGCCCCCATTTATCTCACGCCCGTCATCTCTTCGACTCACTTCACGTCAAAGATGTTATCTCATGGACTTCACTTATCTCCGGTTACACACGCTCCGGCCTGCCACGTCAATCGATATCACTTTTCTACGAAATGTTGGCATTTCCTATTCAACCCAATGCTTTTACTCTATCTTCTGTTATTAAAGCTTGTTCTGCGTTAAATGACGTAAACCTTGGGAGATGTTTTCATTCGATGGTTTTAACGCGTGGGTTTGATTGGAATACTGTTGTTTCGTGTTCGTTGATTGATATGTATGGTTGGAATCGCGCGGTTGATGATGCATGGAGAGTGTTTGATGAAATGTTTGTGAAAGATGATGTGTTTTGTTGGACTTCGATTATATCGTGTTTTACAAGGAATGATATGTATAAAGAGGCGTTGAAGTTTTTTTATGTTATGAATAGGGTTCGTGGGGTGGTTCCGGATGGTTATACGTTTGGGACGATTTTGACGGCTTGTGCTAATTTAGGGTTGTTGAGGCAAGGTAAGGAGGTTCATGGGAAGGTTGTTGGTTTAGGTTTTGGGGGGAATGTTGTTGTGGAGAGTAGTTTGTTGGATATGTATGGGAAATGTGGGTGTGTTAGACATTCTAGGATTTTGTTTGATAGGTTGAGTGATGAGAAAAATCATGTTTCTTGGACTGCGATGCTTGGTGTATATTGTCAGAATAAGGAGTATCAGAATGTGCTTGATCTTGTTAGGGAGAGGGGGGATTTGGATTTTTATGCGTTTGGGATTGTTCTTCGTGCGTGTTCGGGGTTGGCTGCGGTGAATCATGGGAAGGAGGTTCATTGTATGTATGTGAGGAAAGGTGGATGGAAAGACGTTATCATTGAGTCTGCATTGGTTGATTTGTATGCTAAATGTGGTATGGTTGATTTTGCATGTACAATGTTTGAACGTATGGAGGTTAGGAATTTGATCACGTGGAACTCAATGATCAGTGGGTTCGCACAGAATGGAAGAGGGGTTGAGGCGTTGGCGTTGTTTGAAGATATGATTAAGGAAGGGATTAAACCTGATTCCATCACTTTTGTTGCGGTTCTTTTTGCTTGTAGTCATGCGGGTTTGGTTGATGAAGGGAGAAGGTTTTTAACTTTGATGGGAGAATATGGGATTAAGCCAGTCGTTGAACATTATAATTGCATGATTGATCTGTTGGGGCGTGCCGGGTTTATAGACGAGGCCGAGTGTTTGTTGGAGAATGCAGATTGCAGATATGATAAATCACTTTGGGCAGCTCTTCTTGGAGCTTGTACTAAGTGTTCCGATTATATAACTGCCGAACGCGTCGCAAAGAAGATGATTGAATTGGAGCCTGACTTCCATTTGAGTTATGTTCTGCTTAATAACATCTACAGAGAAGTTGGCCGATGGGATGATGCTCTGGAGATCAGGAAGTTGATGGAAGATAGAGGGGTTAAGAAAATGGCTGGTAAGAGCTGGATTGATAGTCAAAATCGGAAGGGTTCTCACGTGAACGTTTCTATGGAATAA 1845 0.4369 MKKLHHLHVLPLKQDHSFISTSSQILHHLKTGSLTDAIHLLNTSQPSLSLKPVIYASLLQTSVKTNSFHHGASVHAHVLKSGLHSDRFVGNSLLTLYFKLNPGPHLSHARHLFDSLHVKDVISWTSLISGYTRSGLPRQSISLFYEMLAFPIQPNAFTLSSVIKACSALNDVNLGRCFHSMVLTRGFDWNTVVSCSLIDMYGWNRAVDDAWRVFDEMFVKDDVFCWTSIISCFTRNDMYKEALKFFYVMNRVRGVVPDGYTFGTILTACANLGLLRQGKEVHGKVVGLGFGGNVVVESSLLDMYGKCGCVRHSRILFDRLSDEKNHVSWTAMLGVYCQNKEYQNVLDLVRERGDLDFYAFGIVLRACSGLAAVNHGKEVHCMYVRKGGWKDVIIESALVDLYAKCGMVDFACTMFERMEVRNLITWNSMISGFAQNGRGVEALALFEDMIKEGIKPDSITFVAVLFACSHAGLVDEGRRFLTLMGEYGIKPVVEHYNCMIDLLGRAGFIDEAECLLENADCRYDKSLWAALLGACTKCSDYITAERVAKKMIELEPDFHLSYVLLNNIYREVGRWDDALEIRKLMEDRGVKKMAGKSWIDSQNRKGSHVNVSME 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02094 614 NCBIfam pentatricopeptide repeat 224 258 IPR002885 -
Mepo6g02094 614 NCBIfam pentatricopeptide repeat 122 156 IPR002885 -
Mepo6g02094 614 NCBIfam pentatricopeptide repeat 424 458 IPR002885 -
Mepo6g02094 614 SUPERFAMILY TPR-like 220 581 IPR011990 GO:0005515
Mepo6g02094 614 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 105 604 IPR046960 GO:0003723|GO:0009451
Mepo6g02094 614 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 21 178 - -
Mepo6g02094 614 Pfam PPR repeat family 119 166 IPR002885 -
Mepo6g02094 614 Pfam PPR repeat family 222 271 IPR002885 -
Mepo6g02094 614 Pfam PPR repeat family 422 468 IPR002885 -
Mepo6g02094 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 257 IPR002885 -
Mepo6g02094 614 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 393 613 - -
Mepo6g02094 614 Pfam PPR repeat 495 517 IPR002885 -
Mepo6g02094 614 Pfam PPR repeat 195 218 IPR002885 -
Mepo6g02094 614 Pfam PPR repeat 327 351 IPR002885 -
Mepo6g02094 614 Gene3D Tetratricopeptide repeat domain 287 380 IPR011990 GO:0005515
Mepo6g02094 614 Gene3D Tetratricopeptide repeat domain 177 284 IPR011990 GO:0005515
Mepo6g02094 614 Gene3D Tetratricopeptide repeat domain 520 595 IPR011990 GO:0005515
Mepo6g02094 614 Gene3D Tetratricopeptide repeat domain 381 467 IPR011990 GO:0005515
Mepo6g02094 614 Gene3D Tetratricopeptide repeat domain 468 519 IPR011990 GO:0005515
Mepo6g02094 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Mepo6g02094 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Mepo6g02094 614 Gene3D Tetratricopeptide repeat domain 20 176 IPR011990 GO:0005515
Mepo6g02094 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Mepo6g02094 614 Pfam E motif 543 600 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02094 Mepo-Chr6 24940816 24943063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02094 55 600 Glycoside Hydrolase AT3G49170 33.813 1.97e-102 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02094 - - lja:Lj6g3v1093620.1 838.18