Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed4g1091 | ATGAGTTTGGTAGCAGGTTCATACGAGAAATTCATCTGGGGCTTAACACTCCGCTCCCAATCCAAAACCCTAGCCCCTCTTTTTTCATACCCCTCCCACCTCTCCTCCATCAAGTGCGTCGCCGTTTCCGGCCCCGTCGTGGCCTCCGGCGGCGAGGACGACACAATCCACCTCTACGACCTCGCCGCCGCCTCCTCCCTCGGCTCCCTCCACAACCACTCCGCCTCCGTCACCGCCCTCTCCTTCTACTCCCCTCCTGACCTCCCCTTCCCCCGCAACCTCCTCTCCGCCGACGCCGCCGGCAACCTCTCCATCTTCGACGCCGACGGCTTCGTCCACCTCACCACCTTCTCCGTCCACCACAACGCCGCCATCAACGACCTCGCCCTCCACCCTTCCGGCGAGCGCGCCCTCACCGTCGCCCGCGACCAGTGCCTCTCCGTCGTCAACCTCGTCCGCGGTCGCCGGAACTGCTGCATGCGCATCGGCAAGGAGGCGAGCTTGGTCAAGTTTGATGCCACCGGTGATTTGTTCTTCATGGCCGTCAAGGAGAAGGTTTCTGTCCACCAAACCGAGGATGCGAAGATTTTGTTCGAATTTGAATGCCCCAAGCCTGTTCTCTGCGCTGCATCTGCTAGGAATGGAATTCTATATACTGGTGGCGAGGACCGAGGTATCACAGCATGGGACATTAAGAGTGGAAAAGTTGCATACTCCATGGAAGAAGCACATACTTCCCGTGTGAAAGGTATTGTTGTGCTCACAGATAGTGATGGTGCCACAGGGGGTGATGACCCTTACCTAGTGGCATCTGCATCATCTGATGGCATTATACGTGTCTGGGATGTTCGAATGGCTGTTAGAGAGAAGCCACTGGCCGAACATAACACACGGTCAAGACTGACATGCCTTGCTGGGTCATCTTTGAAATTCAAACGACAACGACCCCAGGATGGAAAAAGTAAATCAAAGCTAGTCAGACAACATGCCCAGTCTGGAAAGAGTAAATCAAATGTAGAGGATCAAACAATTGAAGGTTAA | 1041 | 0.5533 | MSLVAGSYEKFIWGLTLRSQSKTLAPLFSYPSHLSSIKCVAVSGPVVASGGEDDTIHLYDLAAASSLGSLHNHSASVTALSFYSPPDLPFPRNLLSADAAGNLSIFDADGFVHLTTFSVHHNAAINDLALHPSGERALTVARDQCLSVVNLVRGRRNCCMRIGKEASLVKFDATGDLFFMAVKEKVSVHQTEDAKILFEFECPKPVLCAASARNGILYTGGEDRGITAWDIKSGKVAYSMEEAHTSRVKGIVVLTDSDGATGGDDPYLVASASSDGIIRVWDVRMAVREKPLAEHNTRSRLTCLAGSSLKFKRQRPQDGKSKSKLVRQHAQSGKSKSNVEDQTIEG | 346 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed4g1091 | 346 | MobiDBLite | consensus disorder prediction | 326 | 346 | - | - | |
| Aed4g1091 | 346 | PANTHER | PAK1 INTERACTING PROTEIN 1 | 1 | 340 | - | - | |
| Aed4g1091 | 346 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 268 | 284 | IPR001680 | GO:0005515 | |
| Aed4g1091 | 346 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 269 | 283 | IPR019775 | - | |
| Aed4g1091 | 346 | SUPERFAMILY | WD40 repeat-like | 20 | 305 | IPR036322 | GO:0005515 | |
| Aed4g1091 | 346 | SMART | WD40_4 | 193 | 230 | IPR001680 | GO:0005515 | |
| Aed4g1091 | 346 | SMART | WD40_4 | 233 | 282 | IPR001680 | GO:0005515 | |
| Aed4g1091 | 346 | SMART | WD40_4 | 63 | 107 | IPR001680 | GO:0005515 | |
| Aed4g1091 | 346 | SMART | WD40_4 | 110 | 150 | IPR001680 | GO:0005515 | |
| Aed4g1091 | 346 | SMART | WD40_4 | 23 | 60 | IPR001680 | GO:0005515 | |
| Aed4g1091 | 346 | MobiDBLite | consensus disorder prediction | 309 | 346 | - | - | |
| Aed4g1091 | 346 | Pfam | WD domain, G-beta repeat | 26 | 60 | IPR001680 | GO:0005515 | |
| Aed4g1091 | 346 | Pfam | WD domain, G-beta repeat | 248 | 282 | IPR001680 | GO:0005515 | |
| Aed4g1091 | 346 | Gene3D | - | 2 | 86 | IPR015943 | GO:0005515 | |
| Aed4g1091 | 346 | PRINTS | G protein beta WD-40 repeat signature | 269 | 283 | IPR020472 | - | |
| Aed4g1091 | 346 | PRINTS | G protein beta WD-40 repeat signature | 217 | 231 | IPR020472 | - | |
| Aed4g1091 | 346 | PRINTS | G protein beta WD-40 repeat signature | 47 | 61 | IPR020472 | - | |
| Aed4g1091 | 346 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 217 | 239 | IPR001680 | GO:0005515 | |
| Aed4g1091 | 346 | Gene3D | - | 87 | 310 | IPR015943 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed4g1091 | Aed-Chr4 | 10226670 | 10229757 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed4g1091 | 27 | 283 | Miscellaneous Gene Families | AT5G08390 | 17.803 | 2.22e-07 | 50.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed4g1091 | K14830 | - | gmx:100777673 | 587.415 |