Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04205 ATGAAGAACCTCCACCACCACCTCCACCACCACCTCCACGCCCTCCCTTTCCTCTCCTCCGACACCCAAATCCTCCACCTCCTAAAAAGCGGCGCCCTCTCCCAAGCCCTGACGCTCCTCAACACCTCCCAACCCACCCTCTCTCTCAAACCCGTCATCTACGCTTCCCTCCTCCAAACCTGCGTCAAAACCTCCTCCTTCCACCACGGCACCTCCGTCCACGCCCACGTCCTCAAATCCGGACTCCACTCCGACCGCTTCGTCGGCAATAGCCTCCTCACTCTCTACTTCAAACTAAACCCCGGCCCCCGTTTGTCCCACGCCCGTCAACTCTTCGACTCACTCTCCGTCAAAGATGTCATCTCATGGACTTCTCTCATCTCCGGTTACACCCGCAACAACCTCCCACATCACTCCATTTCTCTCTTCCATCAAATGTTAACCTTTCCCATTCAGCCCAATGCTTTCACTCTCTCTTCCGTTATCAAAGCATGTTCCATGCTTAACAACCTAACCCTCGCTCGTTGCTTTCATTCCTTGGTTATAACACGTGGGTTTGATTGGAATACTGTTGTTACTTGTTCGTTGATTGATATGTATGGTTGGAATCGCGCCGTTCAGGATGCACGAAAGGTGTTCGATGAATTGAAACGAGACGATGTGTTTTGTTGGACTTCCATTGTGTCTGCGTATACGCGAAATGATTTGTTTAGAGAGGGGTTGAGGTTGTTTTATGTTATGAATAGGGTTCGTGGGTTGGTTCCGGATGGGTTTACGTTTGGGACGGTCTTGACTGCTTGTGCTAATTTGGGGTTGTTGAGGCAAGGGAAGGAGGTTCATGCTAAGGTTGTTGGTTTGGGTTTTGGTGGGAATGTTGTTGTGGAGAGTAGTTTGTTGGATATGTATGGGAAATGTGGGTGTGTTAGGCTTTCTAGGATTGTGTTTGATAGGTTGAGTGATGATAAGAATTCAGTGTCTTGGACTGCAATGCTTGGTGTGTATTGTCAGAATAAGGAGTATCAGAATGTGCTTGGTCTTGTTCAGGAGAGGGGGGTTTTGGATTTTTACGCGTTTGGGATTGTTCTTCGTGCGTGTTCGGGGTTGGCTGCGGTGAATCATGGGAAAGAAGTTCATTGTAAATATGTTAGGGAAGGTGGTTGGAAAGATGTTATAATTGAGTCTGCGTTGGTTGATTTGTATGCAAAATGTGGTATGGTTGATTTTGCACGTACGGTGTTTGTGCATATGGAGGTTAGGAATTTGATCACGTGGAACTCGATGATCAGTGGGTTCGCGCAGAATGGAAGAGGGGTTGAGGCGTTGGCGTTGTTTGAGGATATGATTAAGGAAGGGATTAAACCTGATTCCATCACTTTTGTTGCGGTTCTCTTTGCTTGTTGTCATGCGGGTTTGGTTGATGAAGGGAGAAGGTTTTTTGCTTTGATGGGGGAATATGGGATTAAGCCTGTAGTGGAACATTATAATTGCATGATTGATCTTTTGGGACGTGCTGAGTTTATAGAGGAGGCTGAGTGTTTGTTGGAAAATGCAGATTGCAAATATGATAAATCACTTTGGGCAGCTCTTCTTGGAGCTTGTACTAAAGGCTCTGACTATGACACTGCCGAACGTGTCGCAAAGAAGATGATTGAATTGGAGCCTAACTTCCATTTGAGCTATGTTTTGCTTGGTAACATTTACAGAGAAGTTGGCCGGTGGGACGATGCTGTGGAGATCAGGAAGTTGATGGAAGATAGAGGAGTTAAGAAGTTGCCTGGTAAGAGCTGGATTGATAGTGAAAATCGGAAGGGTTCTCGTGTGAACGTTTATACCGAAAAAAGTGTTTCTAGCACGCGGGAAGCTATTTCATGA 1872 0.4658 MKNLHHHLHHHLHALPFLSSDTQILHLLKSGALSQALTLLNTSQPTLSLKPVIYASLLQTCVKTSSFHHGTSVHAHVLKSGLHSDRFVGNSLLTLYFKLNPGPRLSHARQLFDSLSVKDVISWTSLISGYTRNNLPHHSISLFHQMLTFPIQPNAFTLSSVIKACSMLNNLTLARCFHSLVITRGFDWNTVVTCSLIDMYGWNRAVQDARKVFDELKRDDVFCWTSIVSAYTRNDLFREGLRLFYVMNRVRGLVPDGFTFGTVLTACANLGLLRQGKEVHAKVVGLGFGGNVVVESSLLDMYGKCGCVRLSRIVFDRLSDDKNSVSWTAMLGVYCQNKEYQNVLGLVQERGVLDFYAFGIVLRACSGLAAVNHGKEVHCKYVREGGWKDVIIESALVDLYAKCGMVDFARTVFVHMEVRNLITWNSMISGFAQNGRGVEALALFEDMIKEGIKPDSITFVAVLFACCHAGLVDEGRRFFALMGEYGIKPVVEHYNCMIDLLGRAEFIEEAECLLENADCKYDKSLWAALLGACTKGSDYDTAERVAKKMIELEPNFHLSYVLLGNIYREVGRWDDAVEIRKLMEDRGVKKLPGKSWIDSENRKGSRVNVYTEKSVSSTREAIS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04205 623 Pfam PPR repeat 223 248 IPR002885 -
Vifa1g04205 623 Pfam PPR repeat 493 515 IPR002885 -
Vifa1g04205 623 Pfam PPR repeat 325 349 IPR002885 -
Vifa1g04205 623 Pfam PPR repeat 194 220 IPR002885 -
Vifa1g04205 623 SUPERFAMILY TPR-like 376 555 IPR011990 GO:0005515
Vifa1g04205 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vifa1g04205 623 NCBIfam pentatricopeptide repeat 457 489 IPR002885 -
Vifa1g04205 623 NCBIfam pentatricopeptide repeat 222 256 IPR002885 -
Vifa1g04205 623 NCBIfam pentatricopeptide repeat 121 155 IPR002885 -
Vifa1g04205 623 NCBIfam pentatricopeptide repeat 422 456 IPR002885 -
Vifa1g04205 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 255 IPR002885 -
Vifa1g04205 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 322 608 IPR046960 GO:0003723|GO:0009451
Vifa1g04205 623 Pfam PPR repeat family 420 468 IPR002885 -
Vifa1g04205 623 Pfam PPR repeat family 118 165 IPR002885 -
Vifa1g04205 623 MobiDBLite consensus disorder prediction 608 623 - -
Vifa1g04205 623 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 21 177 - -
Vifa1g04205 623 MobiDBLite consensus disorder prediction 602 623 - -
Vifa1g04205 623 SUPERFAMILY TPR-like 505 579 IPR011990 GO:0005515
Vifa1g04205 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Vifa1g04205 623 Pfam E motif 537 598 IPR046848 -
Vifa1g04205 623 Gene3D Tetratricopeptide repeat domain 472 623 IPR011990 GO:0005515
Vifa1g04205 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Vifa1g04205 623 Gene3D Tetratricopeptide repeat domain 2 171 IPR011990 GO:0005515
Vifa1g04205 623 Gene3D Tetratricopeptide repeat domain 172 285 IPR011990 GO:0005515
Vifa1g04205 623 Gene3D Tetratricopeptide repeat domain 376 471 IPR011990 GO:0005515
Vifa1g04205 623 FunFam Pentatricopeptide repeat-containing protein At2g34400 378 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04205 Vifa-Chr1 648949279 648951150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04205 54 598 Glycoside Hydrolase AT3G49170 34.712 8.89e-104 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04205 - - lja:Lj6g3v1093620.1 860.907