Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1713 ATGAGTCTGGTAGCAGGTTCATACGAGAGGTTCATCTGGGGCTTCACCCTAAAGCCCCAAGACGGAACACTATCCCTAACCCCTCTCTTTTCCTACCCCTCCCACCTCTCCCTCATCAAGTGCGTCGCCGTCTCCGGCTCCGTCGTGGCCTCCGGCGGCGCCGACGACACCATCCACCTCTACGACCTCTCCTCCTCCGCCTCCCTCGGCTCCCTCCACCACCACTCCGCCACCGTCACTGCCCTCTCCTTCTACGCCCATCCCTCCCTCCCCTTCCCCCGCAACCTCCTCTCAGCCGACGCCGACGGCTCCCTCTCCCTCTTCGATGCAGACGGCTTCGTCCACCTCAAGACCCTCCCCTCCGTCCACCGCCGCGCTGTCAACGACCTCGCCCTCCACCCCTCCGGCAAGCTCGCGCTCTCCGTCGGCCGGGATGAGTGCCTCGCCATGGTCAACCTCGTCCGCGGGCGGAGGAGCTTCTGCTGCCGCCTCGGTAAGGAGGCCAGCCTCGTGAGGTTCGATTCCGCCGGCGGGGACAGGTTCTTCATGGCCATGGAGGACAAGGTGACCGTGCACGAGGCCGAGGACGCGCGATTGCTCTTCGAATTGGAGTGCCAGAAGCGTGTTCTCTGCGCCGCGCCGGCAAAGAATGGACTTCTGTATACAGGGGGTGAGGACCGAAATATCACAGCATGGGACATAAACAGTGGAAAGGTAGCATATTGCGTCGAAGGAGCACATGATGCCCGTGTAAAAGGTATTGTTGTCCTTACAGATAGTGATGGTGCTGCAGGAAGTGATGACCCATACCTAGTTGCATCTGCATCATCTGATGGGGTTATACGCGTCTGGGACGTTCGAATGGCTGCCACAGAGAAGTCAAATCCAGTAGCTGAGTGTAAGACACAATCAAGGCTGACGTGCCTTGCTGGATCATCTCTTAAATTGAGACGCCCTCGAGCTGGAAAGAGTAATCCAAAAGGACAGGATCAAACAATGGAAGGTTAA 1008 0.5883 MSLVAGSYERFIWGFTLKPQDGTLSLTPLFSYPSHLSLIKCVAVSGSVVASGGADDTIHLYDLSSSASLGSLHHHSATVTALSFYAHPSLPFPRNLLSADADGSLSLFDADGFVHLKTLPSVHRRAVNDLALHPSGKLALSVGRDECLAMVNLVRGRRSFCCRLGKEASLVRFDSAGGDRFFMAMEDKVTVHEAEDARLLFELECQKRVLCAAPAKNGLLYTGGEDRNITAWDINSGKVAYCVEGAHDARVKGIVVLTDSDGAAGSDDPYLVASASSDGVIRVWDVRMAATEKSNPVAECKTQSRLTCLAGSSLKLRRPRAGKSNPKGQDQTMEG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1713 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 294 IPR001680 GO:0005515
Dod03g1713 335 Pfam WD domain, G-beta repeat 28 62 IPR001680 GO:0005515
Dod03g1713 335 Pfam WD domain, G-beta repeat 265 285 IPR001680 GO:0005515
Dod03g1713 335 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Dod03g1713 335 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Dod03g1713 335 PRINTS G protein beta WD-40 repeat signature 49 63 IPR020472 -
Dod03g1713 335 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
Dod03g1713 335 SUPERFAMILY WD40 repeat-like 3 287 IPR036322 GO:0005515
Dod03g1713 335 Gene3D - 189 316 IPR015943 GO:0005515
Dod03g1713 335 Gene3D - 2 188 IPR015943 GO:0005515
Dod03g1713 335 PANTHER PAK1 INTERACTING PROTEIN 1 1 331 - -
Dod03g1713 335 SMART WD40_4 112 152 IPR001680 GO:0005515
Dod03g1713 335 SMART WD40_4 25 62 IPR001680 GO:0005515
Dod03g1713 335 SMART WD40_4 65 109 IPR001680 GO:0005515
Dod03g1713 335 SMART WD40_4 236 285 IPR001680 GO:0005515
Dod03g1713 335 SMART WD40_4 196 233 IPR001680 GO:0005515
Dod03g1713 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 32 71 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1713 Dod-Chr3 24653843 24657282 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1713 29 286 Miscellaneous Gene Families AT5G08390 19.623 6.53e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1713 K14830 - gmx:100777673 476.092