Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1827 ATGAAGAAGCTCCACCACCACCTCCCCGTGAAGCAAACTCACAGTTTCATCTCCACCGACTCTGAAATCCTCCACCACCTAAAAACCGGTTCCCTCTCACACGCAATCCATCTCCTCAACACATCACAACCAACCCTCTCACTCAAACCAGTCATCTACGCTTCCCTCCTTCAAACCTCCGTCAAAACCAACTCATTCCACCACGGCGCCTCCGTCCACGCTCACGTCCTCAAATCCGGTCTCCACTCCGACCGCTTCGTCGGCAACAGCCTCCTTACTCTTTACTTTAAATTAAACCCCGGCCCCCATTTATCTCACGCCCGTCATCTCTTCGACTCACTTCACGTCAAAGATGTCATCTCATGGACTTCACTTATCTCCGGTTACACTCGCTCCGACCTGCCACATCAATCGATATCTTTATTCTACGAAATGTTGGCATTTCCTGTTCAACCCAATGCTTTTACTCTATCTTCTGTTATCAAAGCTTGTTCTGCGTTAAATGACGTAAACCTTGGGAGATGCTTTCATTCTATGGTTTTAACACGTGGGTTTGATTGGAATACTGTTGTTTCGTGTTCGTTGATTGATATGTATGGTTGGAATCGCGCTGTTGATGATGCACGGAGGGTGTTTGATGAATTGTTTGTGAAAGATGATGTGTTTTGTTGGACTTCAATTATATCGTGTTTTACAAGGAATGATATGTTTAAGGAGTCGTTGAAGTTTTTTTATGTTATGAATAGGGTTCGTGGGGTGGTTCCGGATGGTTATACGTTTGGGACGATTTTGACGGCTTGTGCTAATTTAGGGTTGTTGAGGCAAGGTAAGGAGGTTCATGGGAAGGTTGTTGGTTTAGGTTTTGGGGGGAATGTTGTTGTGGAGAGTAGTTTGTTGGATATGTATGGGAAATGTGGGTGTGTTAGACATTCTAGGATTGTGTTTGAGAGGTTGAGTGATGAGAAGAATAATGTTTCTTGGACTGCAATGCTTGGTGTGTATTGTCAGAATAAGGAGTATCAGAATGTGCTTGATCTTGTTAGGGAGAGGGGGGATTTGAATTTTTACGCGTTTGGGATTGTTCTTCGCGCGTGTTCGGGGTTGGCTGCGGTGAATCATGGGAAGGAGGTTCATTGTATGTATGTGAGGAAAGGTGGATCGAAAGACGTTATCATTGAGTCTGCATTGGTTGATTTGTATGCTAAATGTGGTATGGTTGATTTTGCATGTACAATGTTTGCAAGTATGGAGGTTAGGAATTTGATCACTTGGAACTCGATGGTCAGTGGGTTTGCGCAGAATGGAAGAGGGGTTGAGGCATTAGCGTTGTTTGAAGATATGATTAAGGAAGGGATTAAACCTGATTCCATCACTTTTGTTGCGGTTCTTTTTGCTTGTAGTCATGCGGGTTTGGTTGATGAAGGAAGAAAGGTTTTTACTTTGATGGGAGAATATGGGATTAAGCCTGTCGTGGAACATTATAATTGCATGATTGATTTGTTGGGGCGTGCCGGGTTTATAGACGAGGCCGAGTGTTTGTTGGAGAATGCAGATTGCAGATACGATAAATCACTTTGGGCAGCTCTTCTTGGAGCTTGTACTAAGTGTTCCGATTATAGAACTGCCGAACGCGTCGCAAGGAAGATGATTGAATTGGAGCCTGACTTCCATTTGAGTTATGTTCTGCTTAATAACATCTACAGAGAAGTTGGCCGGTGGGATGATGCTCTGGAGATCAGGAAGTTGATGGAAGATAGAGGGGTTAAGAAGATGGCTGGTAAGAGCTGGATTGATAGTCAAAACCGGAAGGGTTCTCATGTAAACGTTTGTATGGAATAA 1839 0.4394 MKKLHHHLPVKQTHSFISTDSEILHHLKTGSLSHAIHLLNTSQPTLSLKPVIYASLLQTSVKTNSFHHGASVHAHVLKSGLHSDRFVGNSLLTLYFKLNPGPHLSHARHLFDSLHVKDVISWTSLISGYTRSDLPHQSISLFYEMLAFPVQPNAFTLSSVIKACSALNDVNLGRCFHSMVLTRGFDWNTVVSCSLIDMYGWNRAVDDARRVFDELFVKDDVFCWTSIISCFTRNDMFKESLKFFYVMNRVRGVVPDGYTFGTILTACANLGLLRQGKEVHGKVVGLGFGGNVVVESSLLDMYGKCGCVRHSRIVFERLSDEKNNVSWTAMLGVYCQNKEYQNVLDLVRERGDLNFYAFGIVLRACSGLAAVNHGKEVHCMYVRKGGSKDVIIESALVDLYAKCGMVDFACTMFASMEVRNLITWNSMVSGFAQNGRGVEALALFEDMIKEGIKPDSITFVAVLFACSHAGLVDEGRKVFTLMGEYGIKPVVEHYNCMIDLLGRAGFIDEAECLLENADCRYDKSLWAALLGACTKCSDYRTAERVARKMIELEPDFHLSYVLLNNIYREVGRWDDALEIRKLMEDRGVKKMAGKSWIDSQNRKGSHVNVCME* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1827 612 Gene3D Tetratricopeptide repeat domain 285 373 IPR011990 GO:0005515
Mtr2g1827 612 Gene3D Tetratricopeptide repeat domain 374 469 IPR011990 GO:0005515
Mtr2g1827 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Mtr2g1827 612 PANTHER OS06G0611200 PROTEIN 9 608 - -
Mtr2g1827 612 Pfam PPR repeat 325 349 IPR002885 -
Mtr2g1827 612 Pfam PPR repeat 493 515 IPR002885 -
Mtr2g1827 612 Pfam PPR repeat 193 215 IPR002885 -
Mtr2g1827 612 Pfam E motif 538 598 IPR046848 -
Mtr2g1827 612 TIGRFAM PPR: pentatricopeptide repeat domain 457 489 IPR002885 -
Mtr2g1827 612 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Mtr2g1827 612 TIGRFAM PPR: pentatricopeptide repeat domain 422 456 IPR002885 -
Mtr2g1827 612 TIGRFAM PPR: pentatricopeptide repeat domain 120 153 IPR002885 -
Mtr2g1827 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 255 IPR002885 -
Mtr2g1827 612 Gene3D Tetratricopeptide repeat domain 471 611 IPR011990 GO:0005515
Mtr2g1827 612 Gene3D Tetratricopeptide repeat domain 177 284 IPR011990 GO:0005515
Mtr2g1827 612 Pfam PPR repeat family 117 164 IPR002885 -
Mtr2g1827 612 Pfam PPR repeat family 420 466 IPR002885 -
Mtr2g1827 612 Pfam PPR repeat family 220 269 IPR002885 -
Mtr2g1827 612 PANTHER OS07G0578800 PROTEIN-RELATED 9 608 IPR045215 GO:0003723|GO:0009451
Mtr2g1827 612 SUPERFAMILY TPR-like 419 579 IPR011990 GO:0005515
Mtr2g1827 612 Gene3D Tetratricopeptide repeat domain 19 176 IPR011990 GO:0005515
Mtr2g1827 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Mtr2g1827 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1827 Mtr-Chr2 21604572 21607544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1827 53 598 Glycoside Hydrolase AT3G49170 33.932 6.75e-102 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1827 - - lja:Lj6g3v1093620.1 834.713