Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0463 ATGGTTCATGGGCATGTAGTGAAATTGGGTGTGGATGAATTTGATTTGGTGGGAAATTGTTTGATAGAGTTGTATGGTTTCTTGAATTGTTGGAATAGTTTGATTTATGAGGCTTATGAAAGTGGGAAATTTGTGGAAAGTTTTCGAATTTTCTGTAGGATGAGAAAAGAGAATATACAACAACCCGATTCAGTTACTGTTATTAACTTGTTAAGGGTTAGTGTTGAATTGAACTCATTGAAGATTGGGAAAGTTCTTCATTCTTTGGTTGTTGTGAGTAATTTGTGTAAGGAACTAACGGTAAATACTGCGCTGTTGTCTATGTATGCTAAGTTGGGTGATCTAGAATATGCAAGAATGATGTTCGAGAAAATGCCTGAGAAGGATGTTGTAGTTTGGAACATAATGATTTCGGCGTATTCTGGGAAAGGTTACCCTAAGGAATCCTTAGAACTTGTGTATTGTATGGTTAGATCGGGGATTAGACCCGACTTGTTCACAGCAATCCCCACAATTTCTTCGATCACAAAGTTAAAGTTCAACGAGTGGGGGAAGCAGATGCATGCTCAAGTGATGAGAAATGGTTCAGATTATCAGGTTTCTGTTTATAATTCTCTTATTGACATGTATTCAACGTGTGACGACATAAATTCGGCGCAGAAGGTTTTCGGTTTGATAATGGACAAGACTGTGGTTTCTTGGAGTGCAATGATCAAAGGGTATGCAATGCATGGTCAGTGTTTTGAGGCCCTTTCTCTGTTCGTAGAAATGAAGTTGTGTGGTACTAAAGTTGATTTTGTAATAGTCATCAACATTTTGCCTGCTTTTGCAAAGATAGGGGCATTGCATTATGTAAGATACTTACATGGTTACTCGCTGAAAACCAATCTGGATTCGCTTAAATCGCTGAAGACGTCGCTTCTTAGTAGCTATGCCAAATGTGGTTGCATAGAGATGGCTAGAAAGCTTTTTGATGAAGAGAAAAACAGCCATAAAGATATAATTGCATGGAACTCTATGATCACTGCATATTCTAACCATGGAGAGTGGTTTCAATGTTTTCAATTATACGACCAAATGAAACTATCAAATGTTAAACCAGATCAAGTATCATTTCTCGGGATTCTCACGGCTTGTGTTAATTCGGGCCTTGTGGAAAAGGGCAAGGAGATTTTCAAGGAGATGGTGGAAATTTACGGTTACCAGCCTAGTAAGGAACACAATGCTTGTTTGGTTGATCTATTAGGGCGCGCTGGAAAAGTCGATGAAGCAAGCGAAATAATAGAAAATAGTCGATTAAATTCAGATGCGAGGGTTTATGGACCCTTGTTGAGTGCATGTAAGATGCACGATTCAGAAACCGATTTCGCAGAACTTGCTGCTGAGAAACTCATAAATATGGAACCGAAGAATGCTGGAAACTATGTATTGCTATCGAATATATATGCTGCAGCAGGAAAATGGGACAAAGTTGCTAAAATGAGGAGTTTTCTTAGAGATAGAGGACTAAAGAAAATACCAGGGTGTAGCTGGGTAGAGTTGAATGGACAAGTGCACGAGTTTCGCGTCGCAGATCAATCTCATCCAAGAGCAGATGATATATATTCAGTATTGAAAGTTTTGGAGTTTGAAGCAGGCATGGAGGATGATGATGATCTTGAACTCAGTTTTGGAGTTTGA 1680 0.3887 MVHGHVVKLGVDEFDLVGNCLIELYGFLNCWNSLIYEAYESGKFVESFRIFCRMRKENIQQPDSVTVINLLRVSVELNSLKIGKVLHSLVVVSNLCKELTVNTALLSMYAKLGDLEYARMMFEKMPEKDVVVWNIMISAYSGKGYPKESLELVYCMVRSGIRPDLFTAIPTISSITKLKFNEWGKQMHAQVMRNGSDYQVSVYNSLIDMYSTCDDINSAQKVFGLIMDKTVVSWSAMIKGYAMHGQCFEALSLFVEMKLCGTKVDFVIVINILPAFAKIGALHYVRYLHGYSLKTNLDSLKSLKTSLLSSYAKCGCIEMARKLFDEEKNSHKDIIAWNSMITAYSNHGEWFQCFQLYDQMKLSNVKPDQVSFLGILTACVNSGLVEKGKEIFKEMVEIYGYQPSKEHNACLVDLLGRAGKVDEASEIIENSRLNSDARVYGPLLSACKMHDSETDFAELAAEKLINMEPKNAGNYVLLSNIYAAAGKWDKVAKMRSFLRDRGLKKIPGCSWVELNGQVHEFRVADQSHPRADDIYSVLKVLEFEAGMEDDDDLELSFGV* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0463 559 Gene3D Tetratricopeptide repeat domain 29 180 IPR011990 GO:0005515
Psa1g0463 559 Gene3D Tetratricopeptide repeat domain 301 532 IPR011990 GO:0005515
Psa1g0463 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Psa1g0463 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Psa1g0463 559 Pfam PPR repeat 305 326 IPR002885 -
Psa1g0463 559 Pfam PPR repeat 103 129 IPR002885 -
Psa1g0463 559 Pfam PPR repeat 202 227 IPR002885 -
Psa1g0463 559 Pfam PPR repeat 131 161 IPR002885 -
Psa1g0463 559 Pfam PPR repeat 30 59 IPR002885 -
Psa1g0463 559 Pfam PPR repeat 232 261 IPR002885 -
Psa1g0463 559 Pfam PPR repeat family 332 380 IPR002885 -
Psa1g0463 559 Pfam E motif 452 513 IPR046848 -
Psa1g0463 559 Gene3D Tetratricopeptide repeat domain 181 285 IPR011990 GO:0005515
Psa1g0463 559 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 552 - -
Psa1g0463 559 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 552 - -
Psa1g0463 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Psa1g0463 559 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Psa1g0463 559 TIGRFAM PPR: pentatricopeptide repeat domain 103 131 IPR002885 -
Psa1g0463 559 TIGRFAM PPR: pentatricopeptide repeat domain 131 164 IPR002885 -
Psa1g0463 559 TIGRFAM PPR: pentatricopeptide repeat domain 336 368 IPR002885 -
Psa1g0463 559 SUPERFAMILY TPR-like 109 491 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0463 Psa-Chr1 27998169 28000232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0463 31 555 Glycoside Hydrolase AT3G49170 32.463 6.26e-87 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0463 - - gmx:102669772 876.7