Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1879 ATGAAGAAGCTCACCAGCTACACCCTCCCCCCCTTGCAGCGACACACCACCACCACCACCACCACCCTCACCGGCTTCGTCGCCTCCTCCACAGACTCTGAAATCCTCCAACACTGCAAAGATGGTTCCCTCCGTCAAGCCCTCCACCTCCTCAACACTTCCCAAACCACCCTCGACCCAAACCTCAAACCTGTCCTCTACGCCTCCCTCCTCCAAACCTGCACCAAAACCTCCTCCTTCCTCCACGGCACCACCCTCCACGCCCACGCCCTCAAGTCCGGCATCCACTCCGACCGCTTCGTCGGCAACAGCCTCCTCACCCTCTACCTCAAGCTCGGCCCTCACCTCCCCCAGGCACAAACCCTCTTCGACTCGCTCGCCGTCAGAGACATCATCGCCTGGACCTCGCTTATCTCTGCCTACACCCGCGCCGGCCGGCCCATAAACTCCCTCCAACTCTTCTCCCAAATGCTGGACCTCGACATGGAGCCCAACGCATTCACCATTTCCTCCGTCATCACCGCTGCGTCCAAGCTCCGCGACCTTGCTCTCGGGGCGTGCCTCCACGCCATGGTCATCAGCCGCGGCTTCCACTCCAATACGGTGATCTCGAGCGCTCTTGTTGACATGTATGGCAGGAACCGCGCGGTCCGGGATGCACTTAAACTGTTCGATGAATCGCCTGAGCCGGAGGATGTCGTTGGCTGGACCGCTATCATATCGACGCTGACGCGGAATGACATGTTTAGGGAGGCTCTGAGGTTGTTCGTCGCAATGCACCGGGGTTGTGGGTTGGTTCCGGATGGGTTCACGTTCGGGACGCTGCTGGCTGCTTGTGCGAATTTGGGGTGGTTGAGGCAGGGCAAGGAGTTGCACGCGAAGGTTGTTGGTTTAGGGATTTGCGGAAATGTTGTTGTTGAGAGCAGCTTGTTGGATATGTATGGCAAGTGTGGGAAGGTTGGGCAAGCTAGGGTTGTGTTTGATAGGTTAGGGGACAAGAATTCAGTGTCTTGGACTGCAATGCTTAGTGCATATTGTCAGAATAAGGAATATGAGGCTGTGTTTGAGCTCGTGAGGGAGAGGGGTGTGTCGGATCTGTATGCATTCGGGACTGTTCTTCGCGCGTGTTCCGGGGTGGCTGCTGTGATGCTAGGGAAGGAGGTGCATTGTCAGTATGTGAGGAAGGGTGGCTGGAGGGATGTTATTGTGGAGTCTGCTCTAGTTGATCTTTATGCCAAGTGTGGATGTGTTGATTTCGCTCAGAGATTGTTCTTGAGCATGGAAGTTAGGAATCAGATCACGTGGAATGCAATGATTGGCGGTTTGGCGCAGAATGGGAGAGGGACGGAGGTGTTGGAGTTGTTTGAGGATATGATCAAGGAGGGGATGGAGCCTGATTACATCACTTTCATTGGTGTTCTTTTTGCTTGTAGCCACACAGGTTTGGTGGATGAAGGGAGGAGGTATTTTGCTTTGATGGTGGATGAGTATGGGATTAAGCCCGGGGTGGAGCATTACAATTGTATGATTGATCTTCTGGGCCGCGCTGAGATGATAGAGGAGGCTGAGAGTTTGCTGGAGAATGCAGATTGCAGGTATGATCATTCACTGTGGGCGGTTCTTCTCGGAGCTTGCACTAAATGCTCTGACTATGTCACTGCTGAGCGCGTCGCGAGGAAGATGATTGAGCTGGAGCCTGACTTCCATTTGAGTTATGTTCTGCTTGGTAACATTTACAGAGCAGTTGGCAGGTGGAATGATGCTATGGAGATCAGGAAGTTGATGGAAGATAGAGGGGTTAAGAAGTTGCCCGGCAAGAGCTGGATTGGGAGTGAAAATCAAAAGGGTTCTCTGTCTGGTTTAGCCAATGTGAATGTTTTTGAGAGAAGCAGTGTTTCTAGCATTGGGGAGGCTGTGTGA 1920 0.5354 MKKLTSYTLPPLQRHTTTTTTTLTGFVASSTDSEILQHCKDGSLRQALHLLNTSQTTLDPNLKPVLYASLLQTCTKTSSFLHGTTLHAHALKSGIHSDRFVGNSLLTLYLKLGPHLPQAQTLFDSLAVRDIIAWTSLISAYTRAGRPINSLQLFSQMLDLDMEPNAFTISSVITAASKLRDLALGACLHAMVISRGFHSNTVISSALVDMYGRNRAVRDALKLFDESPEPEDVVGWTAIISTLTRNDMFREALRLFVAMHRGCGLVPDGFTFGTLLAACANLGWLRQGKELHAKVVGLGICGNVVVESSLLDMYGKCGKVGQARVVFDRLGDKNSVSWTAMLSAYCQNKEYEAVFELVRERGVSDLYAFGTVLRACSGVAAVMLGKEVHCQYVRKGGWRDVIVESALVDLYAKCGCVDFAQRLFLSMEVRNQITWNAMIGGLAQNGRGTEVLELFEDMIKEGMEPDYITFIGVLFACSHTGLVDEGRRYFALMVDEYGIKPGVEHYNCMIDLLGRAEMIEEAESLLENADCRYDHSLWAVLLGACTKCSDYVTAERVARKMIELEPDFHLSYVLLGNIYRAVGRWNDAMEIRKLMEDRGVKKLPGKSWIGSENQKGSLSGLANVNVFERSSVSSIGEAV* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1879 639 Gene3D Tetratricopeptide repeat domain 294 358 IPR011990 GO:0005515
Lja6g1879 639 Pfam PPR repeat 336 360 IPR002885 -
Lja6g1879 639 Pfam PPR repeat 205 226 IPR002885 -
Lja6g1879 639 Pfam PPR repeat 405 430 IPR002885 -
Lja6g1879 639 Pfam PPR repeat 308 333 IPR002885 -
Lja6g1879 639 Pfam PPR repeat 505 527 IPR002885 -
Lja6g1879 639 Gene3D Tetratricopeptide repeat domain 359 494 IPR011990 GO:0005515
Lja6g1879 639 PANTHER OS06G0611200 PROTEIN 28 617 - -
Lja6g1879 639 Gene3D Tetratricopeptide repeat domain 495 629 IPR011990 GO:0005515
Lja6g1879 639 Gene3D Tetratricopeptide repeat domain 184 293 IPR011990 GO:0005515
Lja6g1879 639 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Lja6g1879 639 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Lja6g1879 639 Pfam E motif 552 609 IPR046848 -
Lja6g1879 639 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Lja6g1879 639 Gene3D Tetratricopeptide repeat domain 58 183 IPR011990 GO:0005515
Lja6g1879 639 PANTHER OS07G0578800 PROTEIN-RELATED 28 617 IPR045215 GO:0003723|GO:0009451
Lja6g1879 639 SUPERFAMILY TPR-like 106 591 IPR011990 GO:0005515
Lja6g1879 639 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 267 IPR002885 -
Lja6g1879 639 TIGRFAM PPR: pentatricopeptide repeat domain 506 527 IPR002885 -
Lja6g1879 639 TIGRFAM PPR: pentatricopeptide repeat domain 133 166 IPR002885 -
Lja6g1879 639 TIGRFAM PPR: pentatricopeptide repeat domain 336 360 IPR002885 -
Lja6g1879 639 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Lja6g1879 639 TIGRFAM PPR: pentatricopeptide repeat domain 236 268 IPR002885 -
Lja6g1879 639 Pfam PPR repeat family 431 477 IPR002885 -
Lja6g1879 639 Pfam PPR repeat family 130 175 IPR002885 -
Lja6g1879 639 Pfam PPR repeat family 232 281 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1879 Lja-Chr6 46055081 46057330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1879 67 609 Glycoside Hydrolase AT3G49170 34.539 6.15e-107 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1879 - - lja:Lj6g3v1093620.1 1269.22