Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0059 ATGAAGAAGCTCGATTTCAGTCGCCATTACGGCTTCCTGGCCTCCAACCTTAGAATCTCCACCAAAACACCAACCATGGAGATGGAGTCCCAGATTCTCCAATACAGCAAAGATGGCTCTCTCTCTCAAGCCCTCAAACTCCTCAACACCCTCAACAGAAACTCCTCTTCCCATCTCACTATCAAACCGGTACTATACGCTTCCCTCCTCCAAACCTGCATCAAAACCACTTCATTCACCCATGGCACTCAACTCCACGCTCATGTCCTCAAATCTGGTCTTCAAAATGACCGCTTCGTTGGTAACAGCTTGCTCTCCCTCTACTTCAAACTAAGTCCCCGTATCAGCGAAGCTCGTAGAGTCTTCGATAAGCTTTATGTAAAAGACGTGATATCTTGGACTTCAATGATTTCTGGGTATGTTAAAGTTGGTGAACACCAGGAATCACTTCAATTGTTCTTTGAAATGGTGGATTTGAGTGTTGAGCCTAATGAGTTCACTTTGTCCTCTGTGATCAAGGCTTGTTCTGAACTTGGGTACTTGAAACTTGGTAGATGTTTTCACGGGGTGGTTATAAGTCATGGGTTTGACTGCAATCATGTTATTATAAGTGCTTTAATTGATATGTATGGGAGGAATCATGCAGTGGGGGATGCAAGGAAGCTGTTTGATGAATTGCCTGAACCAGATGCTGTGTGTTGGACATCAGTTATATCAGCGTTTGCGAGGAATGATATGTTTAAGGAAGCTTTGGATTGTTTTTATGTTATGCATTTGGATCGTGGGTTGGTGCCAGATGGGTTTACTTTTGGGACATTGTTGGCTGCTTGTGCGAATTTGGGGTGGTTAAGGCAGGGGAAAGAGGTGCATGCCAAAGTTGTTACGTCAGGGATATGTGGGAATGTGGTTGTCGATAGTAGTCTCTTAGATATGTATGGAAAATGTGGCTTGGTTCAATGGTCTAGGAGCATTTTTGATAGAATGAGCTTTAAGAACTCAGTGTCTTGGAGTGCTATGCTTGGTGTGTATTGCCAAAATGGAGAATGTGAAACTGTGCTGAATCTTGTTAGGGAGAGGAGAGTTGCAGATCTTTACAGCTTTGGGACTATTATTCGTGCGTGTTCAGGGCTGGCTGCTGTGAGACAAGGGAAAGAGGTTCATTGTCAGTATGTAAGAAAAGGTGGTTGGGGAGATGTTATAGTAGAGTCTGCCATGGTTGATCTATATGCAAAATGTGGGTGCGTTGATTTTGCACATAGATTGTTCTTGAATATGCAAGTTAGAAATTTGATTACGTGGAACTCGATGATTGGTGGGTTTGCACAAAATGGAAGAGGGGAAGACGCACTGGCCTTATTTGAGGATATGATCAAAGAGGGGGTGAAGCCTGACTATATTACTTTTATTAATGTTCTTTTTGCTTGTAGTCATACGGGTTTGATTGATCAAGGGAGAAAATATTTCGCTTCAATGATAGAGGAATATGAGATCAAGCCTGGAGTTGAGCACTACAATTGCATGATTGATCTCCTGGGCCGTGCTGAGCTAATAGAGGAGGCTGAAAGTTTACTTGAGAATGCCCACTGCAGACATGATCAATCGCTTTGGGCAGTTCTTCTTGGGGCTTGCACTAAATGCTCAGACTATTTAACTGCAGAACGCGTTGCAAGAAAGATGATTGAGCTGGATCCTAATTTTCATTTAAGCTATGTTCTGCTTGGCAACATTTATAGAGCAGTTGGCCGATGGAATGATGCTCTGGAGATCAGGAAGTTAATGGAAGATAGAGGGGTTAAGAAGATTCCAGGGAAGAGCTGGGTTGATAATGAGAATCAGAAAGGTTCTCGTCTTGATTTGACCAAGATGATTGTTGCTGCGTAA 1881 0.4301 MKKLDFSRHYGFLASNLRISTKTPTMEMESQILQYSKDGSLSQALKLLNTLNRNSSSHLTIKPVLYASLLQTCIKTTSFTHGTQLHAHVLKSGLQNDRFVGNSLLSLYFKLSPRISEARRVFDKLYVKDVISWTSMISGYVKVGEHQESLQLFFEMVDLSVEPNEFTLSSVIKACSELGYLKLGRCFHGVVISHGFDCNHVIISALIDMYGRNHAVGDARKLFDELPEPDAVCWTSVISAFARNDMFKEALDCFYVMHLDRGLVPDGFTFGTLLAACANLGWLRQGKEVHAKVVTSGICGNVVVDSSLLDMYGKCGLVQWSRSIFDRMSFKNSVSWSAMLGVYCQNGECETVLNLVRERRVADLYSFGTIIRACSGLAAVRQGKEVHCQYVRKGGWGDVIVESAMVDLYAKCGCVDFAHRLFLNMQVRNLITWNSMIGGFAQNGRGEDALALFEDMIKEGVKPDYITFINVLFACSHTGLIDQGRKYFASMIEEYEIKPGVEHYNCMIDLLGRAELIEEAESLLENAHCRHDQSLWAVLLGACTKCSDYLTAERVARKMIELDPNFHLSYVLLGNIYRAVGRWNDALEIRKLMEDRGVKKIPGKSWVDNENQKGSRLDLTKMIVAA* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0059 626 Pfam PPR repeat family 229 279 IPR002885 -
Lan14g0059 626 Pfam PPR repeat family 128 175 IPR002885 -
Lan14g0059 626 Pfam PPR repeat family 429 475 IPR002885 -
Lan14g0059 626 TIGRFAM PPR: pentatricopeptide repeat domain 131 165 IPR002885 -
Lan14g0059 626 TIGRFAM PPR: pentatricopeptide repeat domain 232 266 IPR002885 -
Lan14g0059 626 TIGRFAM PPR: pentatricopeptide repeat domain 431 464 IPR002885 -
Lan14g0059 626 PANTHER OS06G0611200 PROTEIN 20 618 - -
Lan14g0059 626 SUPERFAMILY TPR-like 515 589 IPR011990 GO:0005515
Lan14g0059 626 SUPERFAMILY TPR-like 396 565 IPR011990 GO:0005515
Lan14g0059 626 Pfam E motif 551 608 IPR046848 -
Lan14g0059 626 Gene3D Tetratricopeptide repeat domain 188 295 IPR011990 GO:0005515
Lan14g0059 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Lan14g0059 626 Gene3D Tetratricopeptide repeat domain 23 187 IPR011990 GO:0005515
Lan14g0059 626 Gene3D Tetratricopeptide repeat domain 356 493 IPR011990 GO:0005515
Lan14g0059 626 PANTHER OS07G0578800 PROTEIN-RELATED 20 618 IPR045215 GO:0003723|GO:0009451
Lan14g0059 626 Gene3D Tetratricopeptide repeat domain 494 626 IPR011990 GO:0005515
Lan14g0059 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Lan14g0059 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 265 IPR002885 -
Lan14g0059 626 Pfam PPR repeat 334 358 IPR002885 -
Lan14g0059 626 Pfam PPR repeat 306 329 IPR002885 -
Lan14g0059 626 Pfam PPR repeat 503 525 IPR002885 -
Lan14g0059 626 Pfam PPR repeat 204 227 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0059 Lan-Chr14 816890 820997 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0059 66 608 Glycoside Hydrolase AT3G49170 34.058 6.52e-110 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0059 - - qlo:115954951 885.56