Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1711 ATGAAGAAGCTCCACTTGAAGCGCCACTGCAGCTTCCTCGCGACCACCACCACCAAACGAACGAAGGAGTCCCAGATCCTCCAACACTGCAGAGATGGCCGTCTCCCACAAGCCCTCGCTCTCCTCAAATCCCTCAACAACTCCACACCCAACCCCGTCCTGTACGCCTCCCTCCTCCAGACCTGCACCAAATCCGCCTCCTTCCTCCAAGGCGCCCACCTCCACGCCCACCTCCACAAGTCCGCCCTCGACGCCGACCGCTTCGTCGGCAACAGCCTCCTCTCCCTTTACTTCAAGCTCTCCCCTCGCTTCCACGACGCCCGCACACTCTTCGACGCTCTCCCCTTCAAAGACGTCATCTCCTGGACCTCCATCATCTCCGGCTACGTCCAAACCGGCGACCCAAACAGCTCCTTAAAACTTTTCTTCCACATGTTGGGCCTCGGCGTTGACCCCAATGCCTTCACTCTTTCCTCCGTCATCAAGGCCTGCTCCGACCTCGGTGACTTGAGGCTCGGCAGGTGCTTCCACGCCGTCGTTTTCGGCCGCGGGTTTGGCTCCAACCGCGTCATTTCGAGTGCTTTGATTGATATGTATGGGAGGAACAGTAAGGCTGAGGATGCGCGCCGGCTGTTTGATGAATTGCTCGAACCGGATGCCGTGTGTTGGACGTCGGTTATATCGGCGCTTACCCGGAATGATAGGTTTAAGGAAGCCTTGGAGCTGTTCTGTGCGATGCATAGGGGTTGCGGGTTGGCGCCGGATGGTTTTACCTTTGGGACATTGCTGGCTGCTTGTGGTAACTTGGGGTGGCTGAGGCAGGGCAAGGAGGTGCATGGTAGGGTTGTTACTTCGGGGGTTTGTGGCAATGTGGTTGTTGAGAGTAGTGTTTTGGACATGTATGGTAAATGCGGCTCGGTTCGCTTGTCTAGGATTGTTTTTGATAGGATGAGGAATAAGAACTCGGTGTCATGGACAGCTATGCTTGGCGTGTATTGTCAAAATGGGGAATGTGAGACTGTGCTCAATCTTGTTAGGGAGAGTAGGATTGTGGATATTTACAGCTTTGGGACTATTCTTCGTGCGTGTTCAGGGCTGGCTGCTGCGAGACAAGGGAAGGAAGTTCATTGTCAGTATGTGAGGAAGGGCGGTTGGAGGGACGTTATAGTAGAATCGGCATTGGTTGATCTATACGCGAAATGTGGGTGCGTTGATTTCGCGAATAGATTGTTCCTGCGTATGCAAGTTCGGAATTTGATAACGTGGAACTCAATGATCGGTGCGTTTGCACAGAATGGAAGAGGGAAGGAAGCCCTGGCCTTGTTTGAGGATATGATCAGAGAGGGGATGAAGCCTGACTATATTACTTTTGTTAATGTTCTTTTTGCTTGTAGTCATACCGGTTTGGTTGATCAAGGGAGAAAATATTTTGCTTTGATGACGAAGGAATATGGGATCAAGCCTGGGGTTGAGCATTACAATTGCATGATTGATCTTCTTGGTCGTGCTGAACTAATAGAGGAGGCTGAATTTTTGATAGAGAATGCGGATTGCCGATACAATCAATCACTTTGGGCAGTTCTTCTTGGAGCTTGCACTAAATGCTCAGACTATATCACGGCAGAACGCATTGCCAAAAAGATGATTGAGCTGGAACCTGACTTCCATTTAAGTTACGTTCTGCTCGGTAACATTTATAGAGCAGTTGGCCGGTGGAATGATGCTCTAGCAATCAGGAAGTTAATGGAGGATAGAGGGATTAAGAAGACACCTGGCAAGAGCTGGATTGAAAGTGAGAGTCAAAGGGGTTCTCATTTTGATTTGGTCAATATGAGCGTTGCTGGGAAAAGCAACATGTCTAGCATGGTGGAGGCTGTGTGA 1881 0.5066 MKKLHLKRHCSFLATTTTKRTKESQILQHCRDGRLPQALALLKSLNNSTPNPVLYASLLQTCTKSASFLQGAHLHAHLHKSALDADRFVGNSLLSLYFKLSPRFHDARTLFDALPFKDVISWTSIISGYVQTGDPNSSLKLFFHMLGLGVDPNAFTLSSVIKACSDLGDLRLGRCFHAVVFGRGFGSNRVISSALIDMYGRNSKAEDARRLFDELLEPDAVCWTSVISALTRNDRFKEALELFCAMHRGCGLAPDGFTFGTLLAACGNLGWLRQGKEVHGRVVTSGVCGNVVVESSVLDMYGKCGSVRLSRIVFDRMRNKNSVSWTAMLGVYCQNGECETVLNLVRESRIVDIYSFGTILRACSGLAAARQGKEVHCQYVRKGGWRDVIVESALVDLYAKCGCVDFANRLFLRMQVRNLITWNSMIGAFAQNGRGKEALALFEDMIREGMKPDYITFVNVLFACSHTGLVDQGRKYFALMTKEYGIKPGVEHYNCMIDLLGRAELIEEAEFLIENADCRYNQSLWAVLLGACTKCSDYITAERIAKKMIELEPDFHLSYVLLGNIYRAVGRWNDALAIRKLMEDRGIKKTPGKSWIESESQRGSHFDLVNMSVAGKSNMSSMVEAV* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1711 626 PANTHER OS07G0578800 PROTEIN-RELATED 13 607 IPR045215 GO:0003723|GO:0009451
Dod03g1711 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Dod03g1711 626 Gene3D Tetratricopeptide repeat domain 477 622 IPR011990 GO:0005515
Dod03g1711 626 Pfam E motif 540 597 IPR046848 -
Dod03g1711 626 Gene3D Tetratricopeptide repeat domain 21 174 IPR011990 GO:0005515
Dod03g1711 626 Pfam PPR repeat 295 321 IPR002885 -
Dod03g1711 626 Pfam PPR repeat 323 347 IPR002885 -
Dod03g1711 626 Pfam PPR repeat 193 216 IPR002885 -
Dod03g1711 626 Pfam PPR repeat 492 513 IPR002885 -
Dod03g1711 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 254 IPR002885 -
Dod03g1711 626 Pfam PPR repeat family 418 464 IPR002885 -
Dod03g1711 626 Pfam PPR repeat family 117 164 IPR002885 -
Dod03g1711 626 Pfam PPR repeat family 218 266 IPR002885 -
Dod03g1711 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Dod03g1711 626 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
Dod03g1711 626 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Dod03g1711 626 TIGRFAM PPR: pentatricopeptide repeat domain 120 154 IPR002885 -
Dod03g1711 626 PANTHER OS06G0611200 PROTEIN 13 607 - -
Dod03g1711 626 Gene3D Tetratricopeptide repeat domain 373 466 IPR011990 GO:0005515
Dod03g1711 626 Gene3D Tetratricopeptide repeat domain 272 371 IPR011990 GO:0005515
Dod03g1711 626 Gene3D Tetratricopeptide repeat domain 175 271 IPR011990 GO:0005515
Dod03g1711 626 SUPERFAMILY TPR-like 201 578 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1711 Dod-Chr3 24620589 24625303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1711 49 597 Glycoside Hydrolase AT3G49170 33.333 8.82e-106 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1711 - - lja:Lj6g3v1093620.1 882.863