Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2515 ATGCTCACCACCATCACCCCTTCCTTAACCGAGTCTCAGATCCTCCAACACTGCAAAAACGGCTATCTTCCCCAAGCCCTAACCCTCTTCCAAGCCCAAGCCCAAGCCCAAGCCCTCAACCCCTCTCTCAAGCCCGTGTTCTACGCCTCCCTCCTCCAAACCTGCACCAAAACCTCTTCCTTCTCCCACGGCACCCAACTCCACTCCCACGTCATCAAATCCGGTCTCCTCGCCGACCGCTTCGTCGGCAATAGTTTACTCTCCCTCTACTTCAAACTGGGCCCCCATTTCCCCCAGGCCCGTTCCCTCTTCGATGGGCTTTCTGTTAAAGACGTTATCGCTTGGACTTCTATCATCTCTGGCTATGTCCAAGTGGGCCAGCCCAACGACGCCCTCCAACTCTTCTCCCAAATGCTGGGTCTCGGCATCCAGCCCAACGCCTTCACCCTCTCTTCCCTCGTCAAAGCCTGCTCCGACCTTGGCAACTCCAAACTCGGGAAATGCCTCCACGGCGTCGTATTGACCCGCGGCTTCCACTCCAACAATGTCATCTCCAGCGCGTTGATTGACATGTATGGGAGAAATCGCGTGGTGGACGACGCCAAGAAGGTGTTCGATGAATTGCCCGAACTGGACGCGGTGTGTTGGACTACGGTTATTTCCACGTTAACGAGGAACGATAGGTTTAAGGAAGCTGTGGGGTTGTTTTATTCTATGCATAGCGGAGGTTTTGGATTGGTGCCCGATGGGTTCACGTTTGGGACGTTGTTGGCTGCTTGTGGTAACTTGGGGTGGTTGAGGCTGGGAAAAGAGGTGCATGGGAAGGTTGTTACGTTGGGGATGTGTGGGAATGTGGTTGTTGAGAGTAGTTTGTTGGATATGTATGGGAAATGTGGCGCCATTCGGTGTTCGAGGGTTGTGTTTGATGGGTTAAGGGAGAAGAATTCGGTGTCTTGGAGTGCTATGCTTGGTGCTTATTGTCAGAATGGGAAGTGTGAGAATGTGCTTGAGCTTGTTAGGGAGAGGGGGGTTGCTGAGATTTATAGTTTTGGAACTATTATTCGTGCGTGTTCAGGGCTGGCCGCGGTGAGGCAAGGGAAGGAAGTGCATTGTCAGTATGTGAGGAAGGGTGGTTGGAGGGATGTTATAGTGGAGTCAGCATTGGTTGATCTGTATGCGAAATGTGGGTGTGTTGGTTTCGCTCACAGGGTGTTTTTCAGTATGGAGGTTAGGAATTTGATCACTTGGAATGCGATGATTGGAGGGTTTGCACAGAATGGGAGAGGGAGAGAGGCGTTGGAATTGTTTGAGGATATGGTTAAGGAGGGGATGAGGCCAGACCATATCACTTTTGTCACTGTTCTTTTTGCTTGTAGTCACACGGGGTTGGTTGATCAAGGGAGGAAGTATTTTGCTTTGATGATGGAGGAGTATGGGATTAAGCCTGGGGTGGTGCATTACACTTGCATGATTGATCTTCTAGGCCGTGCTGAGCTAATTGAGGAGGCTGAAAGTTTGTTGGAGAGTGCGGATTGCAGATATGATCATTCAATTTGGGCGGTTCTTCTTGGAGCATGCACCAACTGTTCTGACTATGTCACCGCAGAGCGTGTTGCAAAAAAGATGATTGAGCTAGAACCAGATTTCCATTTGAGTTATGTTCTGCTTGGTAACATTTACAGAGCTGCTGGCCGATGGAATGATGCGCTGGAGATCAGGAAGTTGATGGAAGATAGAGGGGTTAAGAAGATGCCTGGAAAGAGCTGGAATGAAAGTGAGACGCAAAAGGGTTCTCATTTTGATTTGGCCCATATGAGTAATTTTGGGATGAGAGGTGTTTTGAGCGTGGGGAAGGCGGTGTGA 1863 0.5024 MLTTITPSLTESQILQHCKNGYLPQALTLFQAQAQAQALNPSLKPVFYASLLQTCTKTSSFSHGTQLHSHVIKSGLLADRFVGNSLLSLYFKLGPHFPQARSLFDGLSVKDVIAWTSIISGYVQVGQPNDALQLFSQMLGLGIQPNAFTLSSLVKACSDLGNSKLGKCLHGVVLTRGFHSNNVISSALIDMYGRNRVVDDAKKVFDELPELDAVCWTTVISTLTRNDRFKEAVGLFYSMHSGGFGLVPDGFTFGTLLAACGNLGWLRLGKEVHGKVVTLGMCGNVVVESSLLDMYGKCGAIRCSRVVFDGLREKNSVSWSAMLGAYCQNGKCENVLELVRERGVAEIYSFGTIIRACSGLAAVRQGKEVHCQYVRKGGWRDVIVESALVDLYAKCGCVGFAHRVFFSMEVRNLITWNAMIGGFAQNGRGREALELFEDMVKEGMRPDHITFVTVLFACSHTGLVDQGRKYFALMMEEYGIKPGVVHYTCMIDLLGRAELIEEAESLLESADCRYDHSIWAVLLGACTNCSDYVTAERVAKKMIELEPDFHLSYVLLGNIYRAAGRWNDALEIRKLMEDRGVKKMPGKSWNESETQKGSHFDLAHMSNFGMRGVLSVGKAV* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2515 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Apr1g2515 620 Pfam E motif 533 589 IPR046848 -
Apr1g2515 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Apr1g2515 620 PANTHER OS06G0611200 PROTEIN 7 600 - -
Apr1g2515 620 Gene3D Tetratricopeptide repeat domain 9 166 IPR011990 GO:0005515
Apr1g2515 620 PANTHER OS07G0578800 PROTEIN-RELATED 7 600 IPR045215 GO:0003723|GO:0009451
Apr1g2515 620 Pfam PPR repeat 186 210 IPR002885 -
Apr1g2515 620 Pfam PPR repeat 485 508 IPR002885 -
Apr1g2515 620 Pfam PPR repeat 214 244 IPR002885 -
Apr1g2515 620 Pfam PPR repeat 317 341 IPR002885 -
Apr1g2515 620 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Apr1g2515 620 TIGRFAM PPR: pentatricopeptide repeat domain 114 147 IPR002885 -
Apr1g2515 620 TIGRFAM PPR: pentatricopeptide repeat domain 214 244 IPR002885 -
Apr1g2515 620 SUPERFAMILY TPR-like 411 572 IPR011990 GO:0005515
Apr1g2515 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 482 IPR002885 -
Apr1g2515 620 Gene3D Tetratricopeptide repeat domain 167 269 IPR011990 GO:0005515
Apr1g2515 620 Gene3D Tetratricopeptide repeat domain 365 466 IPR011990 GO:0005515
Apr1g2515 620 Gene3D Tetratricopeptide repeat domain 270 364 IPR011990 GO:0005515
Apr1g2515 620 Gene3D Tetratricopeptide repeat domain 473 608 IPR011990 GO:0005515
Apr1g2515 620 Pfam PPR repeat family 412 458 IPR002885 -
Apr1g2515 620 Pfam PPR repeat family 110 157 IPR002885 -
Apr1g2515 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2515 Apr-Chr1 34763505 34765400 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2515 48 591 Glycoside Hydrolase AT3G49170 34.838 4.53e-112 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2515 - - gmx:100795078 914.835