Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01846 ATGAGTTTGGTAGCGGGTTCATACGAGAAATTCATCTGGGGCTTCACCCTTCTCTCCAATTCCCAAACCCTAAACCCTCTTTTTTCTTACCCTTCCCATCTCTCCTCCATCAAGTCCGTCGCCGTCTCCGGCCCCGTCGTGGCCTCCGGCGGCGAGGACGACACCATCCAGCTTTATGACCTCGCCGCCGCCGCCTCCCTCGGCTCCCTCCACACCCACTCAGCCACCGTCACCGCCCTCTCCTTCTACGCCCCTCCCCACCTCCCCTTCCCCCGCAACCTCGTCTCCGCCGACGCCAGCGGCAACCTCTCCATCTTCGACGCCGACGGCTTTGTCCACCTCACGACGCTCTCCGTCCACCGCAATTCCGCCATCAATGACCTCGCCCTCCACCCCTCCGGCGAGCGGGCCCTCACTGTCGGCCGCGACGAGTGCCTCGCCGTGGTGAACCTCGTCCGGGGGCGCCGGAACTGCTGCCTGCGCCTAGGCAAGGAGGCGAGTCTGGTCAAGTTTGATGCCTCTGGGGATCAGTTCTTCATGGCGGTGAAGGAGAAGGTCTCCGTCCACCAGACCGAGGATGCGAGGATTCTGTTCGAATTGGAATGCCCAAAGCCTGTTCTCTGTGCTACACCTGCTAAGAATGGACTTCTTTATACTGGTGGGGAGGACCGAAATATCACAGCATGGGACATTAAGACTGGAAAAATTGCATATTGCTTGGAAGAAGCACATACTGCCCGTGTGAAAGGTATTGTTGCACTCACAGAGAGTGATGGTGCTACAGGGGATGATGACCCTTACCTAGTGGCATCTGCGTCATCTGATGGCATTATACGAGTCTGGGATGTTCGAATGGCTGCTAGAGAGAAGCCACTAACTGAACATAACACGCGGTCAAGACTGACGTGCCTTGCTGGATCATCTTTGAAATTCAAACGACAACGACCCCAGGATGGAAAAAGTAAATCGAAGGTGGTCAAACAACAGCGTGCCCTGTCTGGAAAGAGTAAATCAAAGgataggcgcattggatag 1035 0.5536 MSLVAGSYEKFIWGFTLLSNSQTLNPLFSYPSHLSSIKSVAVSGPVVASGGEDDTIQLYDLAAAASLGSLHTHSATVTALSFYAPPHLPFPRNLVSADASGNLSIFDADGFVHLTTLSVHRNSAINDLALHPSGERALTVGRDECLAVVNLVRGRRNCCLRLGKEASLVKFDASGDQFFMAVKEKVSVHQTEDARILFELECPKPVLCATPAKNGLLYTGGEDRNITAWDIKTGKIAYCLEEAHTARVKGIVALTESDGATGDDDPYLVASASSDGIIRVWDVRMAAREKPLTEHNTRSRLTCLAGSSLKFKRQRPQDGKSKSKVVKQQRALSGKSKSKDRRIG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01846 344 PANTHER PAK1 INTERACTING PROTEIN 1 1 335 - -
Gma15g01846 344 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Gma15g01846 344 MobiDBLite consensus disorder prediction 311 344 - -
Gma15g01846 344 SMART WD40_4 63 107 IPR001680 GO:0005515
Gma15g01846 344 SMART WD40_4 193 230 IPR001680 GO:0005515
Gma15g01846 344 SMART WD40_4 233 282 IPR001680 GO:0005515
Gma15g01846 344 SMART WD40_4 23 60 IPR001680 GO:0005515
Gma15g01846 344 SMART WD40_4 110 150 IPR001680 GO:0005515
Gma15g01846 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 284 IPR001680 GO:0005515
Gma15g01846 344 PRINTS G protein beta WD-40 repeat signature 47 61 IPR020472 -
Gma15g01846 344 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Gma15g01846 344 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Gma15g01846 344 Gene3D - 2 201 IPR015943 GO:0005515
Gma15g01846 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 69 IPR001680 GO:0005515
Gma15g01846 344 Gene3D - 204 311 IPR015943 GO:0005515
Gma15g01846 344 Pfam WD domain, G-beta repeat 25 60 IPR001680 GO:0005515
Gma15g01846 344 Pfam WD domain, G-beta repeat 255 282 IPR001680 GO:0005515
Gma15g01846 344 SUPERFAMILY WD40 repeat-like 18 305 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01846 Gma-Chr15 22919125 22931048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01846 20 283 Miscellaneous Gene Families AT5G08390 20.147 2.05e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01846 K14830 - gmx:100777673 663.299