Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1433 ATGGCTTCGTTCACCTCAAGACTCTTCCCTCCGTCCACCAAAACATCAACAATGGAGATGGGGTCTCAGATTCTCCAATACAGCAAAGATGGGTCTCTCCCTCAAGCTCTCAAACTCCTCAACACCCTCAACAAAAACTCCTCTTCCCATCTCAATGTCAAACCTGTACTATATGCTTCCCTCCTCCAAACTTGCATCAAAACCACTTCATTCACCCATGGCACTCAACTCCATGCCCATGTCCTCAAATCGGGTCTTCAAAATGACCGCTTCGTTGGTAACAGCTTGCTCTCACTCTACTTCAAACTAAGTCCCCGTATCAGTGAAGCTCGTAGAGTCTTCGATAAGCTTTATGTAAAAGACGTCATATCTTGGACTTCAATGATTTCTGGGTATGTTAAAGTTGGTGAACACCATGAGTCACTTCAATTGTTCTTTGAAATGGTGGATTTGGGTGTTGAGCCTAATGGGTTCACTTTGTCCTCTGTGATCAAGGCTTGTTCTGAACTTGGGTACTTGAAACTTGGTAGATGTTTTCATGGGGTGGTTATAAATCATGGGTTTGACTGCAATAATGTTATTATAAGTGCTTTAATTGATATGTATGGGAGGAATCATGCGGTGGGGGATGCAAGGAAGTTGTTTGATGAATTGCCTGAACCAGATGCTGTGTGTTGGACATCAGTTATATCAGCGTTTGCGAGAAATGATATGTTTAAGGAAGCTTTGGATTTTTTTTATGTTATGCATATGGATCGTGGGTTGGAGTCAGATGGGTTTACTTTTGGAACATTGTTGGCTGCTTGTGCGAATTTGGGGTGGTTGAGGCAGGGGAAAGAGGTTCATGCCAAAGTTGTTACTTCAGGGATATGCGGAAATGTGGTTGTCGATAGTAGTCTCTTAGATATGTATGGAAAATGTGGCTTGGTTCAGTGGTCTAGGAGTATTTTTGATAGGATGAGCTTTAAGAATTCAGTGTCTTGGAGTGCTATGCTTGGTGTGTATTGCCAAAATGGAGAATGTGAAACTGTGCTGAATCTTGTTAGGGAGAGGACAGTTGCAGATCTTTACAGCTTTGGGACTATTATTCGTGCGTGTTCAGGGCTGGCGGCTGTGAGACAAGGGAAAGAGGTTCATTGTCAGTATGTAAGAAAAGGTGGTTGCGGAGATGTTATAGTAGAGTCTGCCATGGTTGATCTATACGCCAAATGTGGGTGCGTTGATTTTGCATATAGATTGTTCCTGAATATGCAAGTTAGAAATTTGATAACGTGGAACTCTATGATTGGTGGGTTTGCACAGAATGGAAGAGGGGAAGAAGCACTGGCCTTATTTGAGGATATGATCAAAGAGGGGGTGAAGCCTGACTATATTACTTTTATTAATGTTCTTTTTGCTTGTAGTCATACGGGTTTGATTGATCAAGGGAGAAAATATTTTGCTTCAATGACAGAGGAATATGAGATTAAGCCTGGAGTTGAGCATTACAATTGCATGGTTGATCTCCTGGGTCGTGCTGAGCTAATAGAGGAGGCTGAAAGTTTACTAGAGAATGCAGACTGCAGACATGATCAATCGCTTTGGGCAGTTCTTCTTGGGGCTTGCACTAAATGCTCAGACTATTTAACTGCGGAACGCGTTGCAAGAAAGATGATTGAGCTGGATCCTAATTTTCATTTAAGCTATGTTCTGCTTGGCAACATTTATAGAGCAGTTGGCCGATGGAATGATGCTCTGGAGATCAGGAAGTTAATGGAAGATAGAGGGGTTAAGAAGATTCCAGGGAAGAGCTGGGTTGATAATGAGAATCAGAAGGGTTCTCGTCTTGATTTGACCAAGATGATTGTTGCTGCATAA 1857 0.4233 MASFTSRLFPPSTKTSTMEMGSQILQYSKDGSLPQALKLLNTLNKNSSSHLNVKPVLYASLLQTCIKTTSFTHGTQLHAHVLKSGLQNDRFVGNSLLSLYFKLSPRISEARRVFDKLYVKDVISWTSMISGYVKVGEHHESLQLFFEMVDLGVEPNGFTLSSVIKACSELGYLKLGRCFHGVVINHGFDCNNVIISALIDMYGRNHAVGDARKLFDELPEPDAVCWTSVISAFARNDMFKEALDFFYVMHMDRGLESDGFTFGTLLAACANLGWLRQGKEVHAKVVTSGICGNVVVDSSLLDMYGKCGLVQWSRSIFDRMSFKNSVSWSAMLGVYCQNGECETVLNLVRERTVADLYSFGTIIRACSGLAAVRQGKEVHCQYVRKGGCGDVIVESAMVDLYAKCGCVDFAYRLFLNMQVRNLITWNSMIGGFAQNGRGEEALALFEDMIKEGVKPDYITFINVLFACSHTGLIDQGRKYFASMTEEYEIKPGVEHYNCMVDLLGRAELIEEAESLLENADCRHDQSLWAVLLGACTKCSDYLTAERVARKMIELDPNFHLSYVLLGNIYRAVGRWNDALEIRKLMEDRGVKKIPGKSWVDNENQKGSRLDLTKMIVAA 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1433 618 Gene3D Tetratricopeptide repeat domain 486 618 IPR011990 GO:0005515
Lal4g1433 618 Pfam PPR repeat 326 350 IPR002885 -
Lal4g1433 618 Pfam PPR repeat 298 321 IPR002885 -
Lal4g1433 618 Pfam PPR repeat 495 517 IPR002885 -
Lal4g1433 618 Pfam PPR repeat 196 219 IPR002885 -
Lal4g1433 618 Pfam PPR repeat family 221 271 IPR002885 -
Lal4g1433 618 Pfam PPR repeat family 120 167 IPR002885 -
Lal4g1433 618 Pfam PPR repeat family 421 467 IPR002885 -
Lal4g1433 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Lal4g1433 618 Gene3D Tetratricopeptide repeat domain 179 287 IPR011990 GO:0005515
Lal4g1433 618 PANTHER OS06G0611200 PROTEIN 12 610 - -
Lal4g1433 618 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Lal4g1433 618 TIGRFAM PPR: pentatricopeptide repeat domain 123 156 IPR002885 -
Lal4g1433 618 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Lal4g1433 618 Gene3D Tetratricopeptide repeat domain 17 178 IPR011990 GO:0005515
Lal4g1433 618 Gene3D Tetratricopeptide repeat domain 347 485 IPR011990 GO:0005515
Lal4g1433 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Lal4g1433 618 SUPERFAMILY TPR-like 433 581 IPR011990 GO:0005515
Lal4g1433 618 Pfam E motif 543 600 IPR046848 -
Lal4g1433 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 257 IPR002885 -
Lal4g1433 618 PANTHER OS07G0578800 PROTEIN-RELATED 12 610 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1433 Lal-Chr4 18486042 18487898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1433 58 600 Glycoside Hydrolase AT3G49170 34.601 6.45e-112 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1433 - - qlo:115954951 874.774