Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0446 ATGTTTTCAGGTTCAGCCAAATGCTCCACTAACCACCATTTGTTACGTCTCTTCAGCATTGCCAGAATCTTCCATGCAAGGTTTTTCAGCACTTCATCTTCTATGTTAGATCTCTGCACCAAGCCCCAGCACCTTCAACAACTCCATGCCAGGTTCTTCCTCCATGGCCTCCACCAAAACCAATCTCTTTCCTCCAAACTCATGGACTGCTACTCCAAATTTGGACTCCTGGACTTAATGCACAAGCTTTTTTACTCCACTCAAAACCCAGATTCTGTTCTCTACAAAGCAATCTTAAGAAACTTGTATCAGTTTGGTGAATATGACAAGACCCTCTTTTTGTACAAAGAGATGGTTGGGAAGTCCGTGTACCCAGATGAAGAAAGTTGCTCTTTTGTTTTGAGATCTTGCTTTTGTTTGTCTCATGAACAAGGGAAGATGGTTCATGGGCAGATAGTAAGGCTGGGTTTGGATGCATTTGACTCGGTGGGAAGAACTTTGGTAGAGTTGTATGACATGAATGGTTTTATAAATGTGGATGAACCTGCTGAAGGAAAATATGTAAAGGAACTGAATTATTGGAATAACTTGATTTCAGAGGCATCTGAAAATGGGAAAATGGAGGAAAGCTTTAAATTTTTGTGTAGGATGAGAAAGGAGAATATCCAACCTAATTCAAGTACTGTGATTGGCTTGTTAAAGTCCACTGTTAAGTTGAACTCTCTGAAGACAGGACAATCCCTACACTCCTTTGTTGTTGTGAGCAACCTGTGTGAAGAACTAGCTGTGAATACTGCACTGTTGTCAATGTATGCAAAGTTGGGTAGTCTAGAAGATGCAAGAATGCTGTTTGAGAAAATGCCTGACAAGGACCTTGTAGTCTGGAACATAATGATTTCAGCATATGCAGGGAATGGATTCCCCAAGAAATCCTTAGAACTTGTATATTGTATGGTTAGATCAGGTTTTAGACCTGACTTGTTCACGGCAATTCCTGCCATTTCTTCTATCACTCAATTAAAGTATAATGAATGGGGAAAGCAAATGCACGCTCATGTGATAAGAAATGGTTCAGATTATCAGGTATCCATTCACAATTCTTTAATCGACATGTATTCTGCATGTGATGACTTAAATTTGGCACAAAAGATTTTTGGCTTCATAATGAACAAGACTGTGGTTTCATGGGGTGCAATGATCAAAGGATATACAATGCATGATCAGCCTCTCGAGGCTCTGTCTCTATTCTTGAAAATGAAGTTGAGTGGTACTAGAATTGACTTCATTATAGTCATTAACATCTTGCCAGCCTTTGCAAAGATAGGGGCATTGCATTATGTAAGTTACTTACACGGTTACTCTTTGAAAATCAGTCTTGATTCACTCAAATCCCTTAAGACATCCTTTCTTAGTAGCTATGCAAAATGTGGTTGCATAGAAATGGCCAGAAAGCTTTTTGATGAAGAGAAAAGTATCCATAGAGATATAATTGCGTGGAACTCAATGATCAGTGCGTATTCTAAACATGGAGAGTGGTTTAGATGTTTTCAATTGTACAGCCAAATGAAACTATCGAACATTGTACCGGACCAAGTAACATTTCTTGGGCTGCTCACAGCTTGTGTTAATTCAGGCCTTGTTAGCAAAGGCAAAGAGATTTTCAAGGAAATGGTGGAAATATATGGTTGCCAACCTTGTCAGGAACACCATACTTGTATGGTTGATCTACTCGGACGTGCTGGCCAAATCCATGAAGCCAATGAAATAATAAAAACTATTCCACTGGAGTCAGATGCAAGGGTTTATGGCCCCTTGTTGAGTGCCTGTAAGATGCACTCAGAGACCCGTTTAGCAGAACTTGCTGCTCAGAAGCTTATAAATATGGAACCTAAAAATGCTGGAAACTATGTATTGCTCTCCAATATATATGCTGCAGCAGGAAAGTGGGACAAAGTTGCTAAAATGAGGAGTATTCTTAGAGATAGAGGACTAAAGAAAACACCAGGTTGTAGCTGGCTTGAATTAAATGGACAAGTGCACGAGTTTCGTGTTGCAGATAAATCTCATAAAAGATGGGAGGATATATACTCAATCTTAAATGTACTAGAGTTGGAAGCAGGGGATATGGAGAATGATCTTAAACTCTTTGACCCTTCTGTCATTAAGGGGTGTGAATTGCACATGAATCAACATAACCTAAGACATAACACGATAAGTTAA 2220 0.3941 MFSGSAKCSTNHHLLRLFSIARIFHARFFSTSSSMLDLCTKPQHLQQLHARFFLHGLHQNQSLSSKLMDCYSKFGLLDLMHKLFYSTQNPDSVLYKAILRNLYQFGEYDKTLFLYKEMVGKSVYPDEESCSFVLRSCFCLSHEQGKMVHGQIVRLGLDAFDSVGRTLVELYDMNGFINVDEPAEGKYVKELNYWNNLISEASENGKMEESFKFLCRMRKENIQPNSSTVIGLLKSTVKLNSLKTGQSLHSFVVVSNLCEELAVNTALLSMYAKLGSLEDARMLFEKMPDKDLVVWNIMISAYAGNGFPKKSLELVYCMVRSGFRPDLFTAIPAISSITQLKYNEWGKQMHAHVIRNGSDYQVSIHNSLIDMYSACDDLNLAQKIFGFIMNKTVVSWGAMIKGYTMHDQPLEALSLFLKMKLSGTRIDFIIVINILPAFAKIGALHYVSYLHGYSLKISLDSLKSLKTSFLSSYAKCGCIEMARKLFDEEKSIHRDIIAWNSMISAYSKHGEWFRCFQLYSQMKLSNIVPDQVTFLGLLTACVNSGLVSKGKEIFKEMVEIYGCQPCQEHHTCMVDLLGRAGQIHEANEIIKTIPLESDARVYGPLLSACKMHSETRLAELAAQKLINMEPKNAGNYVLLSNIYAAAGKWDKVAKMRSILRDRGLKKTPGCSWLELNGQVHEFRVADKSHKRWEDIYSILNVLELEAGDMENDLKLFDPSVIKGCELHMNQHNLRHNTIS* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0446 739 Pfam PPR repeat family 495 542 IPR002885 -
Vra5g0446 739 Pfam PPR repeat family 194 235 IPR002885 -
Vra5g0446 739 Gene3D Tetratricopeptide repeat domain 8 166 IPR011990 GO:0005515
Vra5g0446 739 Gene3D Tetratricopeptide repeat domain 464 704 IPR011990 GO:0005515
Vra5g0446 739 Pfam PPR repeat 293 323 IPR002885 -
Vra5g0446 739 Pfam PPR repeat 394 423 IPR002885 -
Vra5g0446 739 Pfam PPR repeat 265 291 IPR002885 -
Vra5g0446 739 Pfam PPR repeat 467 488 IPR002885 -
Vra5g0446 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Vra5g0446 739 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 249 714 - -
Vra5g0446 739 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 170 - -
Vra5g0446 739 Pfam E motif 612 674 IPR046848 -
Vra5g0446 739 Gene3D Tetratricopeptide repeat domain 259 344 IPR011990 GO:0005515
Vra5g0446 739 Gene3D Tetratricopeptide repeat domain 345 448 IPR011990 GO:0005515
Vra5g0446 739 Gene3D Tetratricopeptide repeat domain 180 258 IPR011990 GO:0005515
Vra5g0446 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Vra5g0446 739 TIGRFAM PPR: pentatricopeptide repeat domain 194 225 IPR002885 -
Vra5g0446 739 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Vra5g0446 739 TIGRFAM PPR: pentatricopeptide repeat domain 498 530 IPR002885 -
Vra5g0446 739 TIGRFAM PPR: pentatricopeptide repeat domain 265 293 IPR002885 -
Vra5g0446 739 TIGRFAM PPR: pentatricopeptide repeat domain 394 427 IPR002885 -
Vra5g0446 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Vra5g0446 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Vra5g0446 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Vra5g0446 739 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 170 - -
Vra5g0446 739 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 249 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0446 Vra-Chr5 4669608 4672309 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0446 31 705 Glycoside Hydrolase AT3G49170 28.673 4.09e-94 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0446 - - gmx:102669772 1233.78