Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1829 ATGCTACGCACACAACATTTGATTCATCTTCTTAACATTCGCAAAATCCCAAACGTTCTTTTACCTTTCCAAACAAGGTTTTTCAGCAATTACTCTTCTTCTATACTGAGTCTCTGCACCAAACCACAACACCTTCAACAAATCCATGCCAGATTCTTCCTCCATGGCCTCCACCAAAACACATCTCTTTCTTCAAAACTCATGGACTGCTACGCCAAGTTTGGCCTCCAAGGTTTGTCCCAGAAAATCTTCTACTTCACTGAAAACCCAGATTCTCTTCTTTACAGTGCCATCTTAAGGAACTTGTCTCGGTTTTGTGAGCATGAAAAGACCCTCTTTTTGTACAAGGAAATGATGCTGAAACTGGGTTTTGATTCATTTGACTTGGTTTGCAACACTTTGATTGAGTTGTATAATGATGTGAGTGATTCTTTGAACGAGAGTGAACCAGTTGAAATAATATGTCCACTTGAATTGAATCATTGGAATAAGTTGATTTATGAGGCTTATGATAGTAGGAAATTTGAGGAAAGCTTTCAACTCTTTTGCAGGATGAGAAAAGAGAATGTTAAGCCTAGTTCAGTTACTGTGATTAACTTATTAAAAGTGGCTGTTGATTTGAAATCATTGAAGATAGGAAAAGCCCTCCACAATCTGGTGGTTGTGAGCAATTTGTGTGAAGAATTGTCTGTGAATACTGCACTGTTGTCAATGTATGTCAAGTTGGGTAGTCTAAAACATGCAAAGTTGTTGTTTGATAAAATGCCTGAGAAGGACCTTGTAGTTTGGAACATAATGGTTTCAGCATATGCAGGAAATGGGTGCCCTAAGGAATCCTTAAAACTTTTACATTTTATGGTTAGATCAAGAGTAAGGTCGGATTTATTTACTGCAATCCCTGCGATTTCTTCAATCACACAATTGAAAAATATTGAATTGGGCAAGCAAATGCATGCTCACGTGATAAGAAATGGTTCGGATTGCCAGGTATCAATTCATAATTCTCTTATTGATATGTATTCTGCATGCGACGACTTAAGTTCATCCCAAAAGATTTTTGACCTGATAATGGATAAGACAGTGGTTTCATGGAGTGCAATGATCAAAGGATATGCAATGCATGATCAGTGTCTTGAGGCTGTGTCTCTGTTCTTAAAAATGAAGTTGAGTGGGATTAGAGTTGACTTCATTATAGTCATTAACATCTTGCCTGCCTTTGCAAAGATAGGGGCATTACTTTATGTTAGATACTTACATGGCTACTCATTGAAAGTAAGCATTGATTCACTCAGATCGGTTAAGACATCGTTTCTTAGCAGCTATGCAAAATGTGGTTGCATAGAGATGGCCAGAAAGCTTTTTGATGAAGAGAAAAACAGCAACAAAGATCTAATTGCATGGAACTGTATGATCAATGCGTATTCTAAACACGGCGAGTGGTTTCAATGTTTTGAGTTGTACGACCAAATGAAACTATCAAATATAATTCCAGATAAAGTAACATTTCTTGGCCTGCTCACAGCTTGTGTCAACTCAGGCCTTGTTATTGAAGGCAAGAAGATTTTCAGGGAAATGGTGGAAATATATGGCTGCTAA 1596 0.3766 MLRTQHLIHLLNIRKIPNVLLPFQTRFFSNYSSSILSLCTKPQHLQQIHARFFLHGLHQNTSLSSKLMDCYAKFGLQGLSQKIFYFTENPDSLLYSAILRNLSRFCEHEKTLFLYKEMMLKLGFDSFDLVCNTLIELYNDVSDSLNESEPVEIICPLELNHWNKLIYEAYDSRKFEESFQLFCRMRKENVKPSSVTVINLLKVAVDLKSLKIGKALHNLVVVSNLCEELSVNTALLSMYVKLGSLKHAKLLFDKMPEKDLVVWNIMVSAYAGNGCPKESLKLLHFMVRSRVRSDLFTAIPAISSITQLKNIELGKQMHAHVIRNGSDCQVSIHNSLIDMYSACDDLSSSQKIFDLIMDKTVVSWSAMIKGYAMHDQCLEAVSLFLKMKLSGIRVDFIIVINILPAFAKIGALLYVRYLHGYSLKVSIDSLRSVKTSFLSSYAKCGCIEMARKLFDEEKNSNKDLIAWNCMINAYSKHGEWFQCFELYDQMKLSNIIPDKVTFLGLLTACVNSGLVIEGKKIFREMVEIYGC* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1829 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Aev04g1829 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Aev04g1829 531 Pfam PPR repeat family 462 510 IPR002885 -
Aev04g1829 531 Gene3D Tetratricopeptide repeat domain 23 231 IPR011990 GO:0005515
Aev04g1829 531 Gene3D Tetratricopeptide repeat domain 296 413 IPR011990 GO:0005515
Aev04g1829 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Aev04g1829 531 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Aev04g1829 531 TIGRFAM PPR: pentatricopeptide repeat domain 233 261 IPR002885 -
Aev04g1829 531 TIGRFAM PPR: pentatricopeptide repeat domain 466 498 IPR002885 -
Aev04g1829 531 TIGRFAM PPR: pentatricopeptide repeat domain 261 292 IPR002885 -
Aev04g1829 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Aev04g1829 531 Pfam PPR repeat 261 290 IPR002885 -
Aev04g1829 531 Pfam PPR repeat 162 190 IPR002885 -
Aev04g1829 531 Pfam PPR repeat 362 392 IPR002885 -
Aev04g1829 531 Pfam PPR repeat 233 259 IPR002885 -
Aev04g1829 531 Pfam PPR repeat 435 456 IPR002885 -
Aev04g1829 531 Gene3D Tetratricopeptide repeat domain 430 530 IPR011990 GO:0005515
Aev04g1829 531 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 124 - -
Aev04g1829 531 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 218 531 - -
Aev04g1829 531 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 3 124 - -
Aev04g1829 531 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 218 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1829 Aev-Chr4 14541099 14542793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1829 65 527 Glycoside Hydrolase AT3G49170 25.000 1.22e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1829 - - aip:107633199 779.63