Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2218 ATGTTCCACTCTCACCACCGTTTGTTACATATTCCCAGAATCTTCCAAACAAGGTTTTCCAGCACTTCCTCTTCTATGTTAGATCTCTGCACCAAACCCCAGCACCTTCAACAACTCCATGCAAGGTTCTTCCTCCATGGCCTTCACCAAAACCAATCTCTTTCCTCCAAACTCATGGATTGCTACGCCAAATTTGGACTCCTGGACTTGTCGCAGAAGCTTTTTTACTACACGCAAAACCCAGATATCGTTCTCTATAGAGCAATCTTAAGAACCTTGTACCAGTTTGGTGAATATGACAATACCCTCTTTTTGTACAAAGCGATGGTTGGGAAGTCCATGTACCCAGATGAAGAAAGTTGCTCCTTTGTTTTGAGATCTTGCTTTTGTTTGTCTCATGAACAAGGGAAGATGATTCATGCGCAGATAGTGAGGCTGGGTTTGGATGCATTTGACTTGGTGGGAAGAACTTTGGTAGAGTTGTATGACATGAATGGTTTTTTTAATGTGGATGAACCAGTTGAAGGAAAATATGTAATGGAATTGAATTATTGGAATAACTTGATTTCAGAGGCATCTGAAAATGGAAAAATGGAGGAAAGCTTTAAACATTTTTGTAGGATGAGAAAGGAGAATATCCAACCTAATTCAATTACTGTGATTGGATTGTTAAGGTCCACTGTTGAGTTGAACTCACTGAAGACGGGACAGGCCCTACACTCTTTTGTTGTTGTGAGCTGCCTGTATGGAAAACTAACTGTGAATACTGCACTGTTGTCAATGTATGCAAAGTTGGGTAGTCTAGAAGATGCAAGAATGGTGTTTGAGAAAATGCCTGACAAGGACCTTGTGGTCTGGAACATAATGATTTCAGCATATTCAGGGAATGGATTCCCCAAGGAATCCTTAGAACTTGTATATTGTATGGTTAGATCAGGTTTTAGACCTGACTTGTTCACGGCAATTCCTGCTATTTCTTCTATCACACAGTTAAAGTATAATGAATGGGGAAAGCAAATGCATGCTCATGTGATAAGAAATGGTTCAGATTATCAGGTATCCATTCACAATTCTCTTATTGACATGTATTCTGCATGTGATGACTTAAATTTGGCACAGAAGATTTTTGGCTTCATAATGAACAAGACTGTGGTTTCATGGAGTGCAATGATCAAAGGATATACAATGCATGATCGGCCTCTTGAGGCTCTGTCTCTTTTCTTGGAAATGAAACGGAGTGGTACTAGACTTGACTTCATTATAGTCATTAACATCTTGCCAGCCTTTGCAAAGATAGGGGCATTGCATTATGTAAGTTACTTACATGGTTACTCGTTGAAAACCAGCCTTGATTCCCTTAAATCCCTTAAGACATCCTTTCTTAGTAGCTATGCAAAATGTGGTTGCATAGAAATGGCCAGAAAGCTTTTTGATGAAGAGAAAAGTATCCATAGAGATATAATTGCGTGGAACTCAATGATCAGTGCGTATTCTAAACATGGGGAGTGGTTTAGATGTTTTCATTTGTACAGCCAAATGAAACTATCGAGCATTGTACCGGACCAAGTGACATTTCTTGGGCTACTCACAGCTTGTGTTAATTCAGGCCTTGTTAGCAAAGGCAAGGAGATTTTCAAGGAAATGGTGGAAATATATGGATACCAACCTTGTAAGGAACATCATACTTGTATGGTTGATCTACTCGGACGTTCTGGCCAAATCCATGAAGCCAATGAAATAATAAAAACTATTCCATTGGAGTCAGATGCCAGGGTTTATGGCCCTTTGTTGAGTGCCTGTAAGATGCACTCAGAGACCCGTTTAGCAGAACTTGCTGCTCAGAAGCTTATAAATATGGAACCTAAAAATGCTGGAAACTATGTACTGCTCTCCAATATATATGCTGCAGCAGGAAATTGGGACAAAGTTGCTAAAATGAGGAGCTTTCTTAGAGATAGAGGACTAAAGAAAACACCAGGTTGTAGCTGGCTTGAATTAAATGGACAAGTGCACGAGTTTCGTGTTGCGGATAAATCTCATCAAAGATGGGAAGATATATACTCAATATTAAATGTACTGGAGTTGGAAGCAGGGGATATGGAAGATGATGATCTTGAACTCTTTGACCCTTTTGTCATTAAGGGGTGTGAATTGCCCATGAATCAACCCAACCTAAGACATAACACCTTATAA 2193 0.3967 MFHSHHRLLHIPRIFQTRFSSTSSSMLDLCTKPQHLQQLHARFFLHGLHQNQSLSSKLMDCYAKFGLLDLSQKLFYYTQNPDIVLYRAILRTLYQFGEYDNTLFLYKAMVGKSMYPDEESCSFVLRSCFCLSHEQGKMIHAQIVRLGLDAFDLVGRTLVELYDMNGFFNVDEPVEGKYVMELNYWNNLISEASENGKMEESFKHFCRMRKENIQPNSITVIGLLRSTVELNSLKTGQALHSFVVVSCLYGKLTVNTALLSMYAKLGSLEDARMVFEKMPDKDLVVWNIMISAYSGNGFPKESLELVYCMVRSGFRPDLFTAIPAISSITQLKYNEWGKQMHAHVIRNGSDYQVSIHNSLIDMYSACDDLNLAQKIFGFIMNKTVVSWSAMIKGYTMHDRPLEALSLFLEMKRSGTRLDFIIVINILPAFAKIGALHYVSYLHGYSLKTSLDSLKSLKTSFLSSYAKCGCIEMARKLFDEEKSIHRDIIAWNSMISAYSKHGEWFRCFHLYSQMKLSSIVPDQVTFLGLLTACVNSGLVSKGKEIFKEMVEIYGYQPCKEHHTCMVDLLGRSGQIHEANEIIKTIPLESDARVYGPLLSACKMHSETRLAELAAQKLINMEPKNAGNYVLLSNIYAAAGNWDKVAKMRSFLRDRGLKKTPGCSWLELNGQVHEFRVADKSHQRWEDIYSILNVLELEAGDMEDDDLELFDPFVIKGCELPMNQPNLRHNTL* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2218 730 Gene3D Tetratricopeptide repeat domain 333 438 IPR011990 GO:0005515
Pvu9g2218 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Pvu9g2218 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Pvu9g2218 730 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 162 - -
Pvu9g2218 730 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 245 704 - -
Pvu9g2218 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Pvu9g2218 730 Pfam PPR repeat 284 314 IPR002885 -
Pvu9g2218 730 Pfam PPR repeat 185 213 IPR002885 -
Pvu9g2218 730 Pfam PPR repeat 458 479 IPR002885 -
Pvu9g2218 730 Pfam PPR repeat 385 414 IPR002885 -
Pvu9g2218 730 Pfam PPR repeat 256 282 IPR002885 -
Pvu9g2218 730 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Pvu9g2218 730 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Pvu9g2218 730 TIGRFAM PPR: pentatricopeptide repeat domain 256 284 IPR002885 -
Pvu9g2218 730 TIGRFAM PPR: pentatricopeptide repeat domain 489 521 IPR002885 -
Pvu9g2218 730 Pfam E motif 603 665 IPR046848 -
Pvu9g2218 730 Gene3D Tetratricopeptide repeat domain 183 332 IPR011990 GO:0005515
Pvu9g2218 730 Gene3D Tetratricopeptide repeat domain 454 692 IPR011990 GO:0005515
Pvu9g2218 730 Gene3D Tetratricopeptide repeat domain 18 149 IPR011990 GO:0005515
Pvu9g2218 730 Pfam PPR repeat family 486 533 IPR002885 -
Pvu9g2218 730 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Pvu9g2218 730 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 2 162 - -
Pvu9g2218 730 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 245 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2218 Pvu-Chr9 31768480 31776783 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2218 20 707 Glycoside Hydrolase AT3G49170 28.350 2.40e-94 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2218 - - gmx:102669772 1212.59