Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0459 ATGAAGAACCTCCACCACCACCTCCACGCTCTCCCCTTGAATCAACACCACACTTTCCTCTCCCCCGACACCCAAATCCTCCACCTCTTGAAAAACGGCGCTCTCTCTCAAGCCCTGAACCTCCTCAACACTTCACAACCAACCCTCTCTCTCAAACCAGTCATCTACGCTTCCCTCCTTCAAACCTGCGTCAAAACCTCCTCATTCCACCACGGCACCTCCGTCCACGCCCACGTCCTCAAATCCGGACTCCACTCCGACCGCTTCGTCGGCAACAGTCTCCTCACTCTCTACTTTAAACTAAGCCCGGGCCCCCATTTATCTCAGGCCCGTAAACTCTTCGACTCACTCTCTATCAAAGATGTCATCTCATGGACTTCTCTCATCTCCGGTTACACCCGCTCCGGTCTGCCACATCAATCTATCTCTCTTTTCCACCAAATGTTAACCTTTCCTATTCAGCCCAATGCTTTTACTCTCTCTTCCGTTGTTAAAGCTTGTTCCCAGCTTAATAACTTAACCCTGGGTCGTTGCTTTCATTCCATGGTTATAACACGTGGGTTTGATTCCAACACTGTTGTTTCTTGCTCGTTGATTGATATGTATGGTTGGAGTCGCGCGGTTGAGGATGCACAGCGGGTGTTCGATGATTTGCCTGAAAAAGACGATGTTTTTTGTTGGACTGCGATTGTATCGACGTTTACGCGAAATGATATGTTTAAAGAGGCGCTGAAGTTGTTTTATGTGATGCAGAGGGTTCGTGGGTTGGTTCCGGATGGTTTTACGTTTGGGACGGTGTTGACTGCTTGTGCTAATTTAGGGTTGTTGAGGCAAGGGAAGGAGGTTCATGCTAAGGTTGTTGGTTTAGGTTTTGGTGGAAATGTTGTTGTTGAGAGTAGTTTGTTGGATATGTATGGAAAATGTGGGTCTGTTAGGCATTCTAGGATTGTGTTTGATAGGTTAAGTGATGATAAGAATTCAGTGACTTGGACTGCAATGCTTGGTGTGTATTGTCAGAATAAAGAATATCAAAATGTGCTTGATCTTGTTAGGGAGAGGGGGGTTTTGGATTTTTACGGATTTGGGATTGTTCTTCGTGCGTGTTCGGGGTTGGCTGCGGTGAATCATGGGAAAGAGGTTCATTGTAAATATGTGAGGAATGGTGGTTGGAAAGATGTTATAATTGAGTCTGCGTTGGTTGATTTGTATGCAAAATGTGGTATGGTTGATTTTGCACGCACGGTGTTTGCGCATATGGAGGTTAGGAATTTGATCACGTGGAACTCGATGATCAGTGGGTTCGCGCAGAATGGAAATGGGGTCGAGGCGTTGGTGTTGTTTGAGGATATGATTAAGGAAGGGATTATACCTGATTCCATCACTTTTGTTGCGGTTCTCTTTGCTTGTAGTCATGCGGGTTTGGTTGATGAAGGGAGACGGTTTTTTGCTTTGATGGGGGAATATGGGATTAAGCCTGTTGTGGAACATTATAATTGCATGATTGATCTTTTGGGGCGTGCTGAGTTTATAGAGGAGGCTGAGTGTTTATTGGAAAATGCAGATTGCAAATATGATAAATCACTTTGGGCAGCTCTTCTTGGAGCTTGTACCAAGTGTTCTGACTACGACACTGCCGAACGCATTGCGAAGAAGATGATTGAATTGGAACCTAACTTCCATTTGAGCTATGTTCTGCTTGGTAACATTTACAGAGAGGTTGGCCGGTGGGACGATGCTTTGGAGATCAGGAAGTTGATGGAAGATAGAGGGGTTAAGAAGTTGCCCGGTAAGAGCTGGATTGATAGTGAAAATCGGAAGGGTTCTCATGTGAACGCTTGTACGGGAAAAGAACTGATGAGAATGATTGGCAAACTAAGGTTACTAAGATACAAACTATTCGTTCTTTACAAATCTTGCTTGTACCTGAGGGTTGACTTGGGACTTCTTGATGATGCAAAGAGCCTCATAACAATTCTACCAAGCGGTCCCTTAGCCGTGGTTGACAGGGAAAGGGGAGGAGCACTTGAGAAGGGAAGGAGAGATTTTAGAAGGGCTGCTGCTGGAAGTTTGGTTATTGATGCGTTAATTGCTCGTTATGGAGGACGTCGTCTGGAGAATCCGTTCGAGGAGCTTTCGACGTTGAGACAGAAGGGAAGTGTGGAGGAATTCGTCGAAGCTTTTGAGCTGTTGTCATCACAAGTTGGAAGGCTTCCTGAAGAACAATACCTGGGATATTTTATGAGTGGATTGAAACCCCAAATTCGGAGGAGGGTGCGTACTCTGAATCCTCGAAATAGGATGGAGATGATGAGGATTGCGAAAGATGTTGAAGAGGAATTAAAGGAGGAAGACGGCGATGGTGAGCGTCGTGATGTGAAAAAAAGGGGGTCGGGTGGGTCAAACCCGAGTCAGAAAACGGGTTCGATTGGATCCAACATAAATTCAACTTCGTCTTTGGTTTCCTCAGCTCGCAAAAACGACGAGGGTCCGCGTTCCGACGCGATTGAGGGGTGGAAGGGAATACGAAGAGAAGGTGAAACCATGACAGAGGAAGGGGAAATTGTGAGTATGGAGGACGTGATGGTGGAAGGTGAAGAAGAAGTGGAGGTGGAATGTAAACTGATGGGGGTATTGGGAAGCATGGGTGAGTCTCACACCATGAAGGTTGAAGGGAAGATACAGAATGTAGATTTATTGGTGTTGATTGATAGTGGTGCGAGCCACAATTTCATTTCTCCCAAAGTGACTACTGCTTTGTGTCTTGTCATCACACCTACAGCAGCTAAGAGTATCAAGCTTGGTGATGGTCATAAGGTGATAACAAATGGAGTGTGTAAAGGGGTCAATATGAAGGTGGGAGGGATTGAAGTGATTGTGGATGCGCTGGTGTTGGAGCTAGGGGGAATGGATATGGTGTTAGAAGTTGCCTGGTTAAGCACTCTTGAGAAGGTGATTATGGATTGGAAGGCCATGAATATGCAATTTTCTTATGAAAATGAGTTGGTGAAATTGCAAGGTCAAGGCAACAAGGTGGCCAGACAATGTTATCTGAACTCCTATCTTGAGGACACTTATAGCAGAACTAAGCTAGGCTGGTGGTGGGCTCATTTACAGTCAATGGAAGCAACCAAGTCAGTGGTTCCCAAAGGCTTAAATCATATACTAGAAGAATTCCAGGAAGTGTTTGGAGATAACATTCAGCTACCTCCTGAGAGGAGTCAGGTGCATCATATTAAGCTTTATCCTGATCATGGTGCCATTAATGTCAGACCCTACAGATGTCATGGTGAGGTAGAAATGAATTCTCTCATTTCTTTTCCCTTGTGGGCCGATAGACAGAAACTTTTGGATGAAATAACTAATGACCCGTACATTCAAAAGTTAATGAAAGAAGTACAGGAGTCTCCTGATGTTAGACCTGGGTTTCTGGTGAAACAAGGAGTTTTACTTTATCATGGCAGGCTGGTACAGGGAGAGTTACCTAAAGACTTGGAAGTGACTGAGGAGACTGATGTGTATCCAGACAAGGTGTTGGGTTCAAGAGTCATAGTGCAGGGGGGTAATAAGGTTCAGCAGACCTTGATACAATGGAAAAACAAAGCTTTAGAGGATGTGACATGGGAGGATAAAGAATTTTTGCGTGGCCAGCTTCCTGAAGTTTGCCTTGAGGACAAGGCATTGTCTAAGAAGGTGGGAGTTGATAGACATGTGATTAGTGAAGTGGGGCCTAGGCCAAGGGCGTGGAAAGTTTATACTAGGAAGAAGACAAAAAGGAATGAAAGATGA 3786 0.4511 MKNLHHHLHALPLNQHHTFLSPDTQILHLLKNGALSQALNLLNTSQPTLSLKPVIYASLLQTCVKTSSFHHGTSVHAHVLKSGLHSDRFVGNSLLTLYFKLSPGPHLSQARKLFDSLSIKDVISWTSLISGYTRSGLPHQSISLFHQMLTFPIQPNAFTLSSVVKACSQLNNLTLGRCFHSMVITRGFDSNTVVSCSLIDMYGWSRAVEDAQRVFDDLPEKDDVFCWTAIVSTFTRNDMFKEALKLFYVMQRVRGLVPDGFTFGTVLTACANLGLLRQGKEVHAKVVGLGFGGNVVVESSLLDMYGKCGSVRHSRIVFDRLSDDKNSVTWTAMLGVYCQNKEYQNVLDLVRERGVLDFYGFGIVLRACSGLAAVNHGKEVHCKYVRNGGWKDVIIESALVDLYAKCGMVDFARTVFAHMEVRNLITWNSMISGFAQNGNGVEALVLFEDMIKEGIIPDSITFVAVLFACSHAGLVDEGRRFFALMGEYGIKPVVEHYNCMIDLLGRAEFIEEAECLLENADCKYDKSLWAALLGACTKCSDYDTAERIAKKMIELEPNFHLSYVLLGNIYREVGRWDDALEIRKLMEDRGVKKLPGKSWIDSENRKGSHVNACTGKELMRMIGKLRLLRYKLFVLYKSCLYLRVDLGLLDDAKSLITILPSGPLAVVDRERGGALEKGRRDFRRAAAGSLVIDALIARYGGRRLENPFEELSTLRQKGSVEEFVEAFELLSSQVGRLPEEQYLGYFMSGLKPQIRRRVRTLNPRNRMEMMRIAKDVEEELKEEDGDGERRDVKKRGSGGSNPSQKTGSIGSNINSTSSLVSSARKNDEGPRSDAIEGWKGIRREGETMTEEGEIVSMEDVMVEGEEEVEVECKLMGVLGSMGESHTMKVEGKIQNVDLLVLIDSGASHNFISPKVTTALCLVITPTAAKSIKLGDGHKVITNGVCKGVNMKVGGIEVIVDALVLELGGMDMVLEVAWLSTLEKVIMDWKAMNMQFSYENELVKLQGQGNKVARQCYLNSYLEDTYSRTKLGWWWAHLQSMEATKSVVPKGLNHILEEFQEVFGDNIQLPPERSQVHHIKLYPDHGAINVRPYRCHGEVEMNSLISFPLWADRQKLLDEITNDPYIQKLMKEVQESPDVRPGFLVKQGVLLYHGRLVQGELPKDLEVTEETDVYPDKVLGSRVIVQGGNKVQQTLIQWKNKALEDVTWEDKEFLRGQLPEVCLEDKALSKKVGVDRHVISEVGPRPRAWKVYTRKKTKRNER* 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0459 1261 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Psa1g0459 1261 Gene3D Acid Proteases 871 1004 IPR021109 -
Psa1g0459 1261 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Psa1g0459 1261 CDD retropepsin_like 889 978 - -
Psa1g0459 1261 MobiDBLite consensus disorder prediction 777 796 - -
Psa1g0459 1261 Gene3D Tetratricopeptide repeat domain 23 176 IPR011990 GO:0005515
Psa1g0459 1261 Gene3D Tetratricopeptide repeat domain 347 465 IPR011990 GO:0005515
Psa1g0459 1261 Gene3D Tetratricopeptide repeat domain 466 520 IPR011990 GO:0005515
Psa1g0459 1261 Gene3D Tetratricopeptide repeat domain 177 288 IPR011990 GO:0005515
Psa1g0459 1261 Gene3D Tetratricopeptide repeat domain 521 597 IPR011990 GO:0005515
Psa1g0459 1261 Pfam Retroviral aspartyl protease 893 985 - -
Psa1g0459 1261 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Psa1g0459 1261 SUPERFAMILY Chromo domain-like 1164 1218 IPR016197 -
Psa1g0459 1261 TIGRFAM PPR: pentatricopeptide repeat domain 425 459 IPR002885 -
Psa1g0459 1261 TIGRFAM PPR: pentatricopeptide repeat domain 225 259 IPR002885 -
Psa1g0459 1261 TIGRFAM PPR: pentatricopeptide repeat domain 123 157 IPR002885 -
Psa1g0459 1261 Pfam E motif 540 601 IPR046848 -
Psa1g0459 1261 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 258 IPR002885 -
Psa1g0459 1261 PANTHER OS06G0611200 PROTEIN 15 612 - -
Psa1g0459 1261 Pfam PPR repeat family 223 272 IPR002885 -
Psa1g0459 1261 Pfam PPR repeat family 120 167 IPR002885 -
Psa1g0459 1261 Pfam PPR repeat family 423 469 IPR002885 -
Psa1g0459 1261 PANTHER OS07G0578800 PROTEIN-RELATED 15 612 IPR045215 GO:0003723|GO:0009451
Psa1g0459 1261 MobiDBLite consensus disorder prediction 797 825 - -
Psa1g0459 1261 MobiDBLite consensus disorder prediction 777 852 - -
Psa1g0459 1261 SUPERFAMILY TPR-like 223 582 IPR011990 GO:0005515
Psa1g0459 1261 MobiDBLite consensus disorder prediction 826 850 - -
Psa1g0459 1261 Pfam PPR repeat 496 518 IPR002885 -
Psa1g0459 1261 Pfam PPR repeat 328 352 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0459 Psa-Chr1 27909026 27917453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0459 56 601 Glycoside Hydrolase AT3G49170 35.189 6.69e-100 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0459 - - lja:Lj6g3v1093620.1 879.782