Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03577 ATGCACTCTCACCACCGTTTGTTATATATTCCCAGAATCTTCCAAACAAGGTTTTCCAGCACTTCCTCTTCTATGTTAGATCTCTGCACCAAACCCCAGCACCTTCAACAACTCCATGCAAGGTTCTTCCTCCATGGCCTCCACCAAAACCAATCTCTTTCCTCCAAACTCATGGATTGCTACGCCAAATTTGGATTCCTGGACTTATCGCAGAAGCTTTTTTACTACACTCAAAACCCAGATACCGTTCTCTACAGAGCAATCTTAAGAAACTTGTACCAGTTTGGTGAATATGACAATACCCTCATTTTGTACAAAGCGATGGTTGGGAAGTCCATGTACCCAGATGAAGAAAGTTGCTCTTTTGTTTTGAGATCTTGCTTTTGTTTGTCTCATGAACAAGGGAAGATGGTTCATGGGCAGATAGTGAGGCTGGGTTTGGATGCATTTGACTTGGTGGGAAGAACTTTGGTAGAGTTGTATGACATGAATGGTTTTTTTAATGTGGATGAACCAGCTGAAGGGAAATATGTAATGGAATTGAATTATTGGAATAACTTGATTTCAGAAGCATCTGAAAATGGAAAAATGGAGGAAAGCTTTAAAATCTTTTGTAGGATGAGAAAGGAGAATATCCAACCTAATTCAATTACTGTGATTGGATTGTTAAGGTCCACTGTTGAGTTGAACTCACTGAAGACGGGACAGGCCCTACACTCTTTTGTTGTTGTGAGCTGCCTGTATGGAAAACTAACTGTGAATACTGCACTGTTGTCAATGTATGCAAAGTTGGATAGTCTAGAAGATGCAAGAATGCTGTTTGAGAAAATGCCTGACAAGGACCTTGTAGTCTGGAACATAATGATTTCAGCATATTCAGGGAATGGATTCCCCAAGGAATCCTTAGAACTTGTATATTGTATGGTTAGATCAGGTTTTAGACCTGACTTGTTCACGGCAATTCCTGCTATTTCTTCTATCACACAGTTAAAGTATAATGAATGGGGAAAGCAAATGCATGCTCATGTGATAAGAAATGGTTCAGATTATCAGGTATCCATTCACAATTCTCTTATTGACATGTATTCTGCTTGTGATGACTTAAATTTGGCACAGAAGATTTTTGGCTTCATAATGAACAAGACTGTGGTTTCATGGAGTGCAATGATCAAAGGATATACAATGCATGATCGGCCTCTTGAGGCTCTGTCTCTTTTCTTGGAAATGAAGCGGAGTGGTACTAGACTTGACTTCATTATAGTCATTAACATCTTGCCAGCCTTTGCAAAGATAGGGGCATTGCATTATGTAAGTTACTTACACGGTTACTCGTTGAAAACCAGCCTTGATTCCCTCAAATCCCTTAAGACATCCTTTCTTAGTAGCTATGCAAAATGTGGTTGCATAGAAATGGCCAGAAAGCTTTTTGATGAAGAGAAAAGTATCCATAGAGATATAATTGCGTGGAACTCAATGATCAGTGCGTATTCTAAACATGGGGAGTGGTTTAGATGTTTTCATTTGTACAGCCAAATGAAACTATCGAACATTGTACCGGACCAAGTGACATTTCTTGGGCTGCTCACAGCTTGTGTTAATTCAGGCCTTGTTAGCAAAGGTAAGGAGATTTTCAAGGAAATGGTGGAAAGATATGGATACCAACCTTGTCAGGAACATCATACTTGTATGGTTGATCTACTCGGACGTTCTGGCCAAATCCATGAAGCCAATGAAATAATAAAAACTATTCCATTGGAGTCAGATGCCAGGGTTTATGGCCCTTTGTTGAGTGCCTGTAAGATGCACTCAGAGACCCGTTTAGCAGAACTTGTTGCTCAGAAGCTTATAAATATGGAACCTAAAAATGCTGGAAACTATGTACTGCTCTCCAATATATATGCTGCAGCAGGAAATTGGGACAAAGTTGCTAGAATGAGGAGTTTTCTTAGAGATAGAGGACTAAAGAAAACACCAGGTTGTAGCTGGCTTGAATTAAATGGACAAGTGCACGAGTTTCGTGTTGCAGATAAATCTCATCAAAGATGGGAAGATATATACTCAATATTAAATGTACTGGAGTTGGAAGCAGGGGATATGGAAGATGATCTTGAACTCTTTGACCCTTTTGTCATAAGGGGTGTGAATTGCACATGA 2154 0.3969 MHSHHRLLYIPRIFQTRFSSTSSSMLDLCTKPQHLQQLHARFFLHGLHQNQSLSSKLMDCYAKFGFLDLSQKLFYYTQNPDTVLYRAILRNLYQFGEYDNTLILYKAMVGKSMYPDEESCSFVLRSCFCLSHEQGKMVHGQIVRLGLDAFDLVGRTLVELYDMNGFFNVDEPAEGKYVMELNYWNNLISEASENGKMEESFKIFCRMRKENIQPNSITVIGLLRSTVELNSLKTGQALHSFVVVSCLYGKLTVNTALLSMYAKLDSLEDARMLFEKMPDKDLVVWNIMISAYSGNGFPKESLELVYCMVRSGFRPDLFTAIPAISSITQLKYNEWGKQMHAHVIRNGSDYQVSIHNSLIDMYSACDDLNLAQKIFGFIMNKTVVSWSAMIKGYTMHDRPLEALSLFLEMKRSGTRLDFIIVINILPAFAKIGALHYVSYLHGYSLKTSLDSLKSLKTSFLSSYAKCGCIEMARKLFDEEKSIHRDIIAWNSMISAYSKHGEWFRCFHLYSQMKLSNIVPDQVTFLGLLTACVNSGLVSKGKEIFKEMVERYGYQPCQEHHTCMVDLLGRSGQIHEANEIIKTIPLESDARVYGPLLSACKMHSETRLAELVAQKLINMEPKNAGNYVLLSNIYAAAGNWDKVARMRSFLRDRGLKKTPGCSWLELNGQVHEFRVADKSHQRWEDIYSILNVLELEAGDMEDDLELFDPFVIRGVNCT* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03577 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Phac9g03577 717 FunFam pentatricopeptide repeat-containing protein At1g11290, chloroplastic 454 691 - -
Phac9g03577 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Phac9g03577 717 Gene3D Tetratricopeptide repeat domain 17 148 IPR011990 GO:0005515
Phac9g03577 717 Gene3D Tetratricopeptide repeat domain 452 688 IPR011990 GO:0005515
Phac9g03577 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 555 IPR002885 -
Phac9g03577 717 Gene3D Tetratricopeptide repeat domain 338 439 IPR011990 GO:0005515
Phac9g03577 717 Gene3D Tetratricopeptide repeat domain 170 245 IPR011990 GO:0005515
Phac9g03577 717 Gene3D Tetratricopeptide repeat domain 248 337 IPR011990 GO:0005515
Phac9g03577 717 NCBIfam pentatricopeptide repeat 283 316 IPR002885 -
Phac9g03577 717 NCBIfam pentatricopeptide repeat 184 215 IPR002885 -
Phac9g03577 717 NCBIfam pentatricopeptide repeat 488 520 IPR002885 -
Phac9g03577 717 NCBIfam pentatricopeptide repeat 522 555 IPR002885 -
Phac9g03577 717 NCBIfam pentatricopeptide repeat 384 417 IPR002885 -
Phac9g03577 717 Pfam PPR repeat 384 413 IPR002885 -
Phac9g03577 717 Pfam PPR repeat 283 313 IPR002885 -
Phac9g03577 717 Pfam PPR repeat 457 478 IPR002885 -
Phac9g03577 717 Pfam PPR repeat 255 281 IPR002885 -
Phac9g03577 717 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 163 IPR046960 GO:0003723|GO:0009451
Phac9g03577 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Phac9g03577 717 FunFam Uncharacterized protein 332 438 - -
Phac9g03577 717 FunFam Uncharacterized protein 19 144 - -
Phac9g03577 717 Pfam PPR repeat family 184 224 IPR002885 -
Phac9g03577 717 Pfam PPR repeat family 485 532 IPR002885 -
Phac9g03577 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Phac9g03577 717 Pfam E motif 602 664 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03577 Phac-Chr9 34880915 34883298 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03577 19 695 Glycoside Hydrolase AT3G49170 27.914 5.06e-92 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03577 - - gmx:102669772 1201.42