Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01248 ATGAAGAACCTAAACGTGAATCGGCACTTGAGCATCCTCGCCTCCATCACCCCCTCCCCCACCGAATCCCAGATCCTCCACCACTGCAAGCTCGGCGCCGTCTCCCAGGCCCTCACCCTCCTAAACTccgaagcccaggcccaagcccaaccccaagcccagaccctgaacccCGCTCTGAAGCCCGTCTTCTACGCCTCCCTCCTCCAAGCCTGCACCAAAACCCAGTCCTTCACCCACGGCACCCACCTCCACGCCCACGTCCTCAAGTCGGGCCTCCTCGCGGACCGCTTCGTGGCCAACAGCCTCCTCTCTCTCTACTTCAAGCTCTCCCCGCACCTCTCCCAGGCCCGCACCCTCTTCGACGCGCTCTCCGTCAAAGACGTCATCGCCTGGACCTCCATCATCTCGGGCTACGTCCAAAAAGCCCAGCCCATCGACGCCATCCGCCTCTTCCTCCAAATGCTGGGCCAAGGCGTCCAGCCCAACGCCTTCACCCTCTCCTCCATCCTCAAAGCCTGCTCCCAGCTCCAACACCTCCCCCTCGGGAGTTCCCTCCACGGAACCATCACCACGCGCGGCTTCGCCTCCAACCGCGTCATCGCGTGCGCGTTGATCGACATGTACGGCAGGGCGCGCGTGCTGGAGGGCGCGCGGAGGGTGTTCGACGAATTGCCGCAACCGGACCCCGTGTGTTGGACGGCGGTTATCTCAACGTTGGCGCGTAACGACAGGTTCAGCGACGCGGTGGGGTTGTTTTGGGCCATGCATGATGGGGGTTTGGGGTTGGAGGCTGATGGGTTCACGTTGGGGACTTTGCTGAACTCGTGTGGGAACTTGGGGTGGTTGAGGATGGGGAAAGAGGTGCATGGGAAGGTTGTTACTTTGGGGATGTGTGGGAATGTGGTTGTGGAGAGTAGTTTGTTGGATATGTATGGGAAGTGTGGTGATGTTGGGTGTGCCAAGTTTGTGTTTGATGGGTTGGAGGGGAGGAATTGGGTGTCTTGGACTGCTATGCTTGGGGTGTATTGTCACAATGGTGAATTTGAGAGTGTGCTTGGGCTTGTTAGGGAGTGGGGGGTGGCGGATGTTTATAGTTTTGCTACGATTCTTCGTGGGTGTTCGGGTTTGGCAGCGGCCAGGCAGGGGAAGGAGGTGCATTGTCAGTATGTGAGGAAGGGTGGGTGGAGGGATGTGGTGGTGGAGTCTGCTTTGGTTGATTTGTATGCCAAGTGTGGGAGTGTGGATTTTGCTCACAGGTTGTTTATGAGGATGGAGGAGAGGAATTTGATCACGTGGAACGCCATGATCGGCGGGTTTGCGAAGAACGGGAGAGGGGAGGAGGCGGTGGAGTTGTTTGAGGAGATGGTGAGGGAGGGGATGAGGCCGGATGGTATAAGTTTTGTGAATGTTCTCTTTGCGTGTAGTCATAATGGTTTGGTTGATCAGGGGAAGAGGTATTTTGATTTGATGAGGATGGAGTATGGGATTAGGCCTGGGGTGGTGCACTACACTTGCATGGTTGATCTTCTGGGAAGGGCTGAGTTGATTGAGGAGGCTGAGAGTTTGTTGGAGAGTGCTGACTGCAGGTATGATCACTCGCTTTGGGCGGTTCTGCTTGGAGCCTGCACCAAGTGTTCGGACTATGTCACGGCCGAGCGTGTTGCAAAGAAGATGATTCAGCTGGAGCCTGAGTTCCATCTGAGTTATGTTCTGCTTGGTAACATTTATAGATCGGTTGGCAGGTGGAATGAGGCTCTGGAGATCAGGAAGTTGATGGAGGAAAGAGGGGTTAAGAAGATGCCTGGCAAGAGCTGGGTTGAGAGTGAGAAGAAGCAAAAGGGTTCTCCTGGATTTGATTTCAGCATTGTTGGGAAGAGCATGGGAGAGGCTGTGTGA 1899 0.5445 MKNLNVNRHLSILASITPSPTESQILHHCKLGAVSQALTLLNSEAQAQAQPQAQTLNPALKPVFYASLLQACTKTQSFTHGTHLHAHVLKSGLLADRFVANSLLSLYFKLSPHLSQARTLFDALSVKDVIAWTSIISGYVQKAQPIDAIRLFLQMLGQGVQPNAFTLSSILKACSQLQHLPLGSSLHGTITTRGFASNRVIACALIDMYGRARVLEGARRVFDELPQPDPVCWTAVISTLARNDRFSDAVGLFWAMHDGGLGLEADGFTLGTLLNSCGNLGWLRMGKEVHGKVVTLGMCGNVVVESSLLDMYGKCGDVGCAKFVFDGLEGRNWVSWTAMLGVYCHNGEFESVLGLVREWGVADVYSFATILRGCSGLAAARQGKEVHCQYVRKGGWRDVVVESALVDLYAKCGSVDFAHRLFMRMEERNLITWNAMIGGFAKNGRGEEAVELFEEMVREGMRPDGISFVNVLFACSHNGLVDQGKRYFDLMRMEYGIRPGVVHYTCMVDLLGRAELIEEAESLLESADCRYDHSLWAVLLGACTKCSDYVTAERVAKKMIQLEPEFHLSYVLLGNIYRSVGRWNEALEIRKLMEERGVKKMPGKSWVESEKKQKGSPGFDFSIVGKSMGEAV 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01248 632 Gene3D Tetratricopeptide repeat domain 385 483 IPR011990 GO:0005515
Cca08g01248 632 Gene3D Tetratricopeptide repeat domain 285 384 IPR011990 GO:0005515
Cca08g01248 632 Gene3D Tetratricopeptide repeat domain 181 284 IPR011990 GO:0005515
Cca08g01248 632 SUPERFAMILY TPR-like 232 589 IPR011990 GO:0005515
Cca08g01248 632 TIGRFAM PPR: pentatricopeptide repeat domain 431 464 IPR002885 -
Cca08g01248 632 TIGRFAM PPR: pentatricopeptide repeat domain 131 164 IPR002885 -
Cca08g01248 632 PANTHER OS07G0578800 PROTEIN-RELATED 15 614 IPR045215 GO:0003723|GO:0009451
Cca08g01248 632 Gene3D Tetratricopeptide repeat domain 21 180 IPR011990 GO:0005515
Cca08g01248 632 Pfam PPR repeat family 127 175 IPR002885 -
Cca08g01248 632 Pfam PPR repeat family 429 475 IPR002885 -
Cca08g01248 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Cca08g01248 632 Gene3D Tetratricopeptide repeat domain 492 629 IPR011990 GO:0005515
Cca08g01248 632 Pfam PPR repeat 334 358 IPR002885 -
Cca08g01248 632 Pfam PPR repeat 204 225 IPR002885 -
Cca08g01248 632 Pfam PPR repeat 502 525 IPR002885 -
Cca08g01248 632 Pfam PPR repeat 231 260 IPR002885 -
Cca08g01248 632 Pfam E motif 550 608 IPR046848 -
Cca08g01248 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Cca08g01248 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Cca08g01248 632 PANTHER OS06G0611200 PROTEIN 15 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01248 Cca-Chr8 36940871 36943881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01248 65 608 Glycoside Hydrolase AT3G49170 34.657 1.95e-111 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01248 - - gmx:100795078 986.097