Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00636 ATGAGTTTGGTTGCAGGTTCCTACGAGAAATTCATCTGGGGTCTCACCCTAAAGCCCCAATCTCAATCCCTAACCCCTCTTTTCTCCTACCCTTCCCACCTCTCCTCCATCAAAACCGTCGCCGTCTCAGGCTCCGTCGTCGCTTCCGGCGGCGACGACGACACCATCCACCTCTACGACCTCTCCGCCGCCTCCTCCCTCGGTTCCCTCCACCAACACTCTGCCTCCGTCACCGCCCTCTCCTTCTACGCCCCTCCCAATCTCCCCTTCCCCCGCAACCTCGTCTCCGCCGACGCCGCTGGCTCTCTCGCCATTTTTGACGCGGACGGCTTCGTCCATCTTACAACGCTTTCCGTCCACCGCAACGCCGCTATCAACGACCTCGCCCTGCACCCGTCCGGTGAGCGCGCCCTCACCGTTGCCCGTGACAACTGCCTTGCCGTCGTCAACCTCGTCCGCGGCCGCCGCAACTGCTGCTTGCGTCTCGACAAGGAAGCTACTCTGGTCAAGTTCAATGCGTCCGGCGACCACTTTTTCATGGCCGCAAAGGAGAAGGTTTCTGTCCACCAGACTGAGGATGCACGCATATTGTTCGAATTGGAGTGCTCCAAGCCCGTTCTCTGCGCTGCTCCTGCTAGGAATGGACTTCTTTACACTGGTGGTGAGGACAAAAGTATAACAGCATGGGATATCAAGACTGGAAAAGTTGCATATTGCTTGGAAGATGCACATACTTCACGTGTCAAAGGTATTGTTGTGCTCACGGATACTGATGGCGCTACGGGGGATGATGATCCTTACCTAGTGGCATCTGGATCATCTGATGGCAGTATACGTGTCTGGGATGTTCGAATGGTGGCTAGAGAGAAACCACTAGCTGAATATAACACAAGGTCAAGATTGACATGCCTTGCTGGAACAAGTCTGAGATTCCGACGGCAAAAGCCCCAGGATGGGAGTAAATCAAAGATAGTCAAACGACAAAGACTCGAGGATGGAAAGAAAGGAGATGATGAAACGAAAGAAGGTTAA 1032 0.5436 MSLVAGSYEKFIWGLTLKPQSQSLTPLFSYPSHLSSIKTVAVSGSVVASGGDDDTIHLYDLSAASSLGSLHQHSASVTALSFYAPPNLPFPRNLVSADAAGSLAIFDADGFVHLTTLSVHRNAAINDLALHPSGERALTVARDNCLAVVNLVRGRRNCCLRLDKEATLVKFNASGDHFFMAAKEKVSVHQTEDARILFELECSKPVLCAAPARNGLLYTGGEDKSITAWDIKTGKVAYCLEDAHTSRVKGIVVLTDTDGATGDDDPYLVASGSSDGSIRVWDVRMVAREKPLAEYNTRSRLTCLAGTSLRFRRQKPQDGSKSKIVKRQRLEDGKKGDDETKEG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00636 343 Gene3D - 190 325 IPR015943 GO:0005515
Vimu10g00636 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 284 IPR001680 GO:0005515
Vimu10g00636 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 239 IPR001680 GO:0005515
Vimu10g00636 343 MobiDBLite consensus disorder prediction 312 343 - -
Vimu10g00636 343 SUPERFAMILY WD40 repeat-like 21 284 IPR036322 GO:0005515
Vimu10g00636 343 Gene3D - 2 189 IPR015943 GO:0005515
Vimu10g00636 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 69 IPR001680 GO:0005515
Vimu10g00636 343 Pfam WD domain, G-beta repeat 26 60 IPR001680 GO:0005515
Vimu10g00636 343 Pfam WD domain, G-beta repeat 244 282 IPR001680 GO:0005515
Vimu10g00636 343 SMART WD40_4 23 60 IPR001680 GO:0005515
Vimu10g00636 343 SMART WD40_4 63 107 IPR001680 GO:0005515
Vimu10g00636 343 SMART WD40_4 110 150 IPR001680 GO:0005515
Vimu10g00636 343 SMART WD40_4 233 282 IPR001680 GO:0005515
Vimu10g00636 343 SMART WD40_4 193 230 IPR001680 GO:0005515
Vimu10g00636 343 MobiDBLite consensus disorder prediction 314 343 - -
Vimu10g00636 343 PRINTS G protein beta WD-40 repeat signature 47 61 IPR020472 -
Vimu10g00636 343 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Vimu10g00636 343 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Vimu10g00636 343 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Vimu10g00636 343 PANTHER PAK1 INTERACTING PROTEIN 1 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00636 Vimu-Chr10 5488796 5492367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00636 24 283 Miscellaneous Gene Families AT5G08390 20.532 2.95e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00636 K14830 - gmx:100777673 562.762