Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0449 ATGAGTTTGGTTGCAGGGTCGTACGAGAAATTCATCTGGGGTCTCACCCTAAAGCCCCAATCACAATCCCTAACGCCTCTTTTCTCCTACCCTTCCCACCTCTCTTCCATCAAAACCGTCGCCATCTCAGGCTCCGTCGTCGCTTCCGGCGGCGACGACGACACCATTCACCTCTACGACCTCTCCGCCGCCTCCTCCCTCGGTTCCCTCCACCAACACTCTGCCTCCGTCACCGCCCTCTCCTTCTACGCCCCTCCCAATCTCCCCTTCCCCCGCAACCTCATCTCCGCCGACGCCGCTGGCTCCCTCGCCATTTTTGACGCGGACGGCTTTGTCCATCTTACCACGCTCTCTGTCCACCGCAACGCCGCTATCAACGACCTCGCCCTGCACCCGTCCGGTGAGCGCGCCCTCACCGTTGCCCGTGACAACTGCCTCGCCGTCGTCAACCTCGTCCGCGGCCGCCGCAACTGCTGCTTGCGCCTCGACAAGGAAGCTACTCTGGTCAAGTTCAATGCGTCCGGCGACCACTTTTTCATGGCCGCGAAGGAGAAGGTTTCTGTCCACCAGACTGAGGATGCACGCATATTGTTCGAATTGGAATGCTCCAAGCCCGTTCTCTGCGCTGCTCCTGCCAGGAATGGACTTCTTTACACGGGTGGTGAGGACAAAAGTATGACAGCATGGGATATCAAGACTGGAAAAGTTGCATATTGCTTGGAAGATGCACATACATCCCGTGTCAAAGGTATTGTTGTGCTCACGGATACTGATGGTTCTACGGGGGATGATGATCCTTACCTGGTGGCATCTGGATCATCTGATGGCAGTATACGTGTCTGGGATGTTCGAATGGTGGCTAGAGAGAAACCACTAGCTGAATATAACACACGGTCAAGATTGACATGCCTTGCTGGAACAAGTCTGAGATTCCGACGGCAAAAGCCCCAGGATGGGAGTAAATCAAAGACAGTCAAACGACAAAGACTCGAGGCTGGAAAGAATGCAAAGGCAGATGATGAAACGAAAGAAGGTTAA 1038 0.5491 MSLVAGSYEKFIWGLTLKPQSQSLTPLFSYPSHLSSIKTVAISGSVVASGGDDDTIHLYDLSAASSLGSLHQHSASVTALSFYAPPNLPFPRNLISADAAGSLAIFDADGFVHLTTLSVHRNAAINDLALHPSGERALTVARDNCLAVVNLVRGRRNCCLRLDKEATLVKFNASGDHFFMAAKEKVSVHQTEDARILFELECSKPVLCAAPARNGLLYTGGEDKSMTAWDIKTGKVAYCLEDAHTSRVKGIVVLTDTDGSTGDDDPYLVASGSSDGSIRVWDVRMVAREKPLAEYNTRSRLTCLAGTSLRFRRQKPQDGSKSKTVKRQRLEAGKNAKADDETKEG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0449 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 284 IPR001680 GO:0005515
Vra5g0449 345 Gene3D - 187 311 IPR015943 GO:0005515
Vra5g0449 345 SUPERFAMILY WD40 repeat-like 21 284 IPR036322 GO:0005515
Vra5g0449 345 MobiDBLite consensus disorder prediction 314 345 - -
Vra5g0449 345 Gene3D - 2 186 IPR015943 GO:0005515
Vra5g0449 345 SMART WD40_4 193 230 IPR001680 GO:0005515
Vra5g0449 345 SMART WD40_4 23 60 IPR001680 GO:0005515
Vra5g0449 345 SMART WD40_4 233 282 IPR001680 GO:0005515
Vra5g0449 345 SMART WD40_4 110 150 IPR001680 GO:0005515
Vra5g0449 345 SMART WD40_4 63 107 IPR001680 GO:0005515
Vra5g0449 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 69 IPR001680 GO:0005515
Vra5g0449 345 PANTHER PAK1 INTERACTING PROTEIN 1 1 341 - -
Vra5g0449 345 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Vra5g0449 345 PRINTS G protein beta WD-40 repeat signature 47 61 IPR020472 -
Vra5g0449 345 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Vra5g0449 345 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Vra5g0449 345 Pfam WD domain, G-beta repeat 26 60 IPR001680 GO:0005515
Vra5g0449 345 Pfam WD domain, G-beta repeat 244 282 IPR001680 GO:0005515
Vra5g0449 345 MobiDBLite consensus disorder prediction 312 345 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0449 27 283 Miscellaneous Gene Families AT5G08390 20.913 4.48e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0449 K14830 - gmx:100777673 564.688