Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02560 | ATGATGTTACAACAGGCTAGGGCGTTTCTAAAACCCCGTCAGAGTTCCTTCCTTTCTCCGCCCTTCCTCCACCGCTTCTGTTCAGCTCCGCCGCCACCAACTGAATCAAACGACGCCGAATTGGTATCAAATCTCCTCCTGCAGCACCACAACCCCTTCCACGCCGCCGAATCGAGCCTCCAGCTCCACGGCATCACCCTCACCCCCGACCTCCTCTTCCAAACCCTCCTCCACCTCAAGAACCACTCCAAGATAGCCCTCTCACTCTTCCACTACGCCAAAACCCTCCCCAATCCCCCTCTCACCCACGCCTCCTACACGCTCCTCATCGATTCCTTGGCCAAGGTTCGCCAATTCGACGTCGCATGGCAACTCATCGTCGAAATGGCCCAGCGCAACCTCCACCCAACCCCTGCCACCTTCCTCACCCTAATTCGCCGCCTTGTAGCCGCCGGCCTCACGCGCCAGGCGGTACGCGCCTTCCACGACATTGACGCCTTTGCCAAAACCACTCCCGACGACTTCTGCTTCCTGCTCGACACGCTCTGCAAGTACGGCTACGTCAGACTCGCCGTCGAGGTTTTCAACAGAAACAGAATCACCTTCCCTCCCAACGTGAAAATATACACTGTTTTGATCTACGGGTGGTGCAAGCTGGGGAAGGTTAAAATGGCGCAAACGTTTCTGAACGAAATGATTGAGCGAGGGATTGAGCCGAATGTTGTTACTTATAACGTTTTGTTGAATGGGGTTTGTAGGAAGGTGAGTTTGCACCCTGAGGAGAGGTTTGAGAAGACTATAAGGAATGCAGAGGAGGTGTTTGATCAAATGCGTAACAACAAGATTGAGCCGGATGTGACTAGCTTCTCGATTTTGCTTCATGTTTATAGCCGCGCGCATAAGCCGGAGCTGGTGCTTGATAAGCTGGGGTTGATGAAGGAGAAAGGGATATTTCCCAATGTGGTGATGTATACCTCGGTTATTAAGTGTCTTGCTTCGTGTGGGAGGCTTGAGGATGCAGAGAGGTTGCTTGAGGAGATGGTGAAGGATGGAGTGAGTCCATGTGCCGCAACGTATAATTGCTTCTTTAAGGAGTATAGAGGGAGGAAGGATGCTGAGAGTGCTTTGAGGATGTTTAAGAGGATGAAGGAGGATGGGTTGTGTGCGCCGAGCTCCCACACCTATGTGATTTTGATTAGGATGTTTTTGAGGTTGGACATGATCAGATTTGTGAAGGAAATATGGGATGATATGAAGGTCACTGGGGCGGGGCCGGATTTGGATTTGTACACGGTTTTGATACACGGGTTGTGTGAGAGGCAGAACTGGAGGGAGGCTTGCCATTATTTTGTTGAGATGATAGAGAAAGGGTTTCTTCCTCTGAAAGGTACCTTTGAGACCCTTTATAGAGGGCTAATTCAAGCTGATATGTTGAGGACTTGGAGGAGATTGAAGAAGAAGCTTGATGAAGAATCAATAACTTTTGGTTCAGAGTTTCAGAATTATCAATTGAAACCTTATAGGAGATAA | 1530 | 0.4993 | MMLQQARAFLKPRQSSFLSPPFLHRFCSAPPPPTESNDAELVSNLLLQHHNPFHAAESSLQLHGITLTPDLLFQTLLHLKNHSKIALSLFHYAKTLPNPPLTHASYTLLIDSLAKVRQFDVAWQLIVEMAQRNLHPTPATFLTLIRRLVAAGLTRQAVRAFHDIDAFAKTTPDDFCFLLDTLCKYGYVRLAVEVFNRNRITFPPNVKIYTVLIYGWCKLGKVKMAQTFLNEMIERGIEPNVVTYNVLLNGVCRKVSLHPEERFEKTIRNAEEVFDQMRNNKIEPDVTSFSILLHVYSRAHKPELVLDKLGLMKEKGIFPNVVMYTSVIKCLASCGRLEDAERLLEEMVKDGVSPCAATYNCFFKEYRGRKDAESALRMFKRMKEDGLCAPSSHTYVILIRMFLRLDMIRFVKEIWDDMKVTGAGPDLDLYTVLIHGLCERQNWREACHYFVEMIEKGFLPLKGTFETLYRGLIQADMLRTWRRLKKKLDEESITFGSEFQNYQLKPYRR | 509 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02560 | 509 | Gene3D | Tetratricopeptide repeat domain | 174 | 262 | IPR011990 | GO:0005515 | |
| Phco7g02560 | 509 | Gene3D | Tetratricopeptide repeat domain | 367 | 505 | IPR011990 | GO:0005515 | |
| Phco7g02560 | 509 | Pfam | Pentatricopeptide repeat domain | 268 | 296 | IPR002885 | - | |
| Phco7g02560 | 509 | Pfam | PPR repeat family | 105 | 148 | IPR002885 | - | |
| Phco7g02560 | 509 | Pfam | PPR repeat family | 319 | 365 | IPR002885 | - | |
| Phco7g02560 | 509 | Pfam | PPR repeat family | 204 | 253 | IPR002885 | - | |
| Phco7g02560 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 102 | 136 | IPR002885 | - | |
| Phco7g02560 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 205 | 239 | IPR002885 | - | |
| Phco7g02560 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 285 | 319 | IPR002885 | - | |
| Phco7g02560 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 320 | 354 | IPR002885 | - | |
| Phco7g02560 | 509 | NCBIfam | pentatricopeptide repeat | 322 | 354 | IPR002885 | - | |
| Phco7g02560 | 509 | NCBIfam | pentatricopeptide repeat | 208 | 241 | IPR002885 | - | |
| Phco7g02560 | 509 | NCBIfam | pentatricopeptide repeat | 105 | 137 | IPR002885 | - | |
| Phco7g02560 | 509 | NCBIfam | pentatricopeptide repeat | 288 | 321 | IPR002885 | - | |
| Phco7g02560 | 509 | NCBIfam | pentatricopeptide repeat | 429 | 460 | IPR002885 | - | |
| Phco7g02560 | 509 | NCBIfam | pentatricopeptide repeat | 358 | 388 | IPR002885 | - | |
| Phco7g02560 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 391 | 425 | IPR002885 | - | |
| Phco7g02560 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 426 | 460 | IPR002885 | - | |
| Phco7g02560 | 509 | Coils | Coil | 260 | 280 | - | - | |
| Phco7g02560 | 509 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 72 | 386 | - | - | |
| Phco7g02560 | 509 | Gene3D | Tetratricopeptide repeat domain | 70 | 173 | IPR011990 | GO:0005515 | |
| Phco7g02560 | 509 | Gene3D | Tetratricopeptide repeat domain | 263 | 366 | IPR011990 | GO:0005515 | |
| Phco7g02560 | 509 | Pfam | PPR repeat | 394 | 419 | IPR002885 | - | |
| Phco7g02560 | 509 | Pfam | PPR repeat | 430 | 458 | IPR002885 | - | |
| Phco7g02560 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 355 | 389 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02560 | Phco-Chr7 | 44399794 | 44401323 | Dispersed |