Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02705 ATGGCGTTTCTGAAACCCCTTCATAGCTCTTTCGTTTCTCCGCGCTTCCTCCGCCGCTTCTGTTCAGCTTCACCGCCACCAAGTGCTTCAAACGACGCCGAATTGGTGTCGAATCTCCTCCTGCAGCACCACAATCCCTTCCACGCCACCGAATCGAGTCTCCAGCTCCACGGGATCACCCTCACCCCCGACCTCCTCTTCCAAACCCTCCTCCGCCTCAAGCACCACACCAAGGTAGCCCTCTCGCTCTTCCACTACGCCAAAACCCTCCCCAATCCCCCTCTCACGCACGCCTCCTACACGCTCCTCATCGACGCCTTGGCTAAGGTTCGCCAATTCGACGTCGCATGGCAACTCATCGTCGAAATGGCCCAGTGCAATCTCGCTCCAACCTCCGCCACCTTCTTAACCCTAATTCGCCGTCTCGTCGCCGCCGGCCTCACGCGCCAGGCCGTACGCGCCTTCCACGACATCGACGCGTTTACCCAAACGACTCCGGACGACTTCTGCTTCCTGCTCGACACGCTCTGTAAGTACGGCCACGTCAGACTCGCTGTCGAGGTTTTCAACAGAAACAAAATCAGTTTCCCTCCCAACGTGAAAATGTACACCGTTTTGATCTACGGGTGGTGCAAGCTGGGGAAGGTTAAAATGGCGCAAACGTTTCTGAACGAAATGATTGAACGAGGCATTGAGCCTAATGTTGTTACTTATAACGTTTTATTGAATGGGGTTTGTAGGAAGGTGAGTTTGCACCCTGAGGAGAGGTTTGAGAGGACTATAAGGAATGCAGAGGAGGTGTTTGATCAAATGCGTAAGAACATAATTGAACCCGATGTGACTAGCTTTTCGATTTTGCTTCATGTTTATAGCCGCGCGCATAAGCCAGAGCTGGTGCTTGATAAGCTGAGGTTGATGAAGGAGAAAGGGATATTTCCCAATGTGGTGATGTATACCTCGGTTATTAAGTGTCTTGCTTCGTGTGGGAGGCTTGAGGATGCAGAGAGGTTGCTTGAGGAGATGGTGAAGGATGGAGTGAGTCCGTGTGCCGCTACCTATAATTGCTTCTTTAAGGAATATAGAGGGAGGAAGGATGCTGAAAGTGCTTTGAGGATGTTTAAGCGGATGAAGGAGGATGGGTTGTGCTCTCCGAGCTCGCATACCTATGTGATTTTGATTAGGATGTTTTTGAGGTTGGACATGGTCAGAGTTGTGAAGGAAATATGGAATGATATGAAGGTGACTGGGGCGGGGCCGGATTTGGATTTGTATACGGTTTTGATACATGGGTTGTGTGAGAGGCAGTGCTGGAGGGAGGCTTGCCATTATTTTGTTGAGATGATAGAGAATGGGTTTCTTCCTCTGAAAGGTACCTTTGAGACCCTGTACAGGGGGCTTATTCAGGCTGATATGTTGAGAACTTGGAGGAGATTGAAGAAGAAGCTTGATGAAGAATCGATAACTTTTGGTTCAGAGTTTCAGAGTTATCAATTGAAACCGTACAGGAGATAA 1512 0.4987 MAFLKPLHSSFVSPRFLRRFCSASPPPSASNDAELVSNLLLQHHNPFHATESSLQLHGITLTPDLLFQTLLRLKHHTKVALSLFHYAKTLPNPPLTHASYTLLIDALAKVRQFDVAWQLIVEMAQCNLAPTSATFLTLIRRLVAAGLTRQAVRAFHDIDAFTQTTPDDFCFLLDTLCKYGHVRLAVEVFNRNKISFPPNVKMYTVLIYGWCKLGKVKMAQTFLNEMIERGIEPNVVTYNVLLNGVCRKVSLHPEERFERTIRNAEEVFDQMRKNIIEPDVTSFSILLHVYSRAHKPELVLDKLRLMKEKGIFPNVVMYTSVIKCLASCGRLEDAERLLEEMVKDGVSPCAATYNCFFKEYRGRKDAESALRMFKRMKEDGLCSPSSHTYVILIRMFLRLDMVRVVKEIWNDMKVTGAGPDLDLYTVLIHGLCERQCWREACHYFVEMIENGFLPLKGTFETLYRGLIQADMLRTWRRLKKKLDEESITFGSEFQSYQLKPYRR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02705 503 Coils Coil 254 274 - -
Spst9g02705 503 Pfam PPR repeat family 313 359 IPR002885 -
Spst9g02705 503 Pfam PPR repeat family 198 247 IPR002885 -
Spst9g02705 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Spst9g02705 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Spst9g02705 503 NCBIfam pentatricopeptide repeat 99 131 IPR002885 -
Spst9g02705 503 NCBIfam pentatricopeptide repeat 387 420 IPR002885 -
Spst9g02705 503 NCBIfam pentatricopeptide repeat 282 315 IPR002885 -
Spst9g02705 503 NCBIfam pentatricopeptide repeat 352 382 IPR002885 -
Spst9g02705 503 NCBIfam pentatricopeptide repeat 423 454 IPR002885 -
Spst9g02705 503 NCBIfam pentatricopeptide repeat 316 348 IPR002885 -
Spst9g02705 503 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Spst9g02705 503 Pfam Pentatricopeptide repeat domain 262 290 IPR002885 -
Spst9g02705 503 Pfam Pentatricopeptide repeat domain 363 396 IPR002885 -
Spst9g02705 503 Gene3D Tetratricopeptide repeat domain 66 163 IPR011990 GO:0005515
Spst9g02705 503 Pfam PPR repeat 424 452 IPR002885 -
Spst9g02705 503 Pfam PPR repeat 99 127 IPR002885 -
Spst9g02705 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Spst9g02705 503 Gene3D Tetratricopeptide repeat domain 164 255 IPR011990 GO:0005515
Spst9g02705 503 Gene3D Tetratricopeptide repeat domain 256 359 IPR011990 GO:0005515
Spst9g02705 503 Gene3D Tetratricopeptide repeat domain 360 488 IPR011990 GO:0005515
Spst9g02705 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Spst9g02705 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Spst9g02705 503 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 94 191 - -
Spst9g02705 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Spst9g02705 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02705 Spst-Chr9 61166008 61167519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02705 82 487 Miscellaneous Gene Families AT4G11690 26.747 9.55e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02705 - - gmx:100804639 866.3