Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2225 ATGATGTTACAACAGGTTAGGGCGTTTCTAAAACCCCGTCAGAGTTCCGTCCTTTCTCCGCCGTTCCTCCACCGCTTCTGTTCAGCTCCACCGCCACTAAGTGAATCAAACGACGCCGAATTGGTGTCGAATCTCCTCCTGCAGCACCACAACCCCTTCCACGCCGCCGAATCGAGCCTCCAGCTCCACGGCATCACCCTCACCCCCGACCTCCTCTTCCAAACCCTCCTCCGCCTCAAGAACCACTCCAAGATAGCCCTCTCACTCTTCCACTACGCCAAAACCCTACCCAATCCCCCTCTCACCCACGCCTCCTACACGCTCCTCATCGATTCCTTGGCCAAGGTTCGCCAATTCGACGTCGCATGGCAACTCATCGTCGAAATGGCCCAGTGCAACCTCCACCCAACCCCTGCCACCTTCCTAACCCTAATTCGCCGCCTTGTAGCCGCCGGCCTCACGCGCCAGGCGGTACGCGCCTTCCACGACATTGACGCCTTTGCCAAAACCACTCCCGACGACTTCTGCTTCCTGCTCGACACGCTCTGCAAGTACGGCTACGTCAGACTCGCCGTCGAGGTTTTCAACAGAAACAGAACCACCTTCCCTCCCAACGTGAAAATATACACTGTTTTGATCTACGGGTGGTGCAAGCTGGGGAAGGTTAAAATGGCGCAAACGTTTTTGAACGAAATGATTGAGCGAGGGATTGAGCCGAATGTTGTTACTTATAACGTTTTGTTGAATGGGGTTTGTAGGAAGGTGAGTTTGCACCCTGAGGAGAGGTTTGAGAGGACGATAAGGAATGCAGAGGAGGTGTTTGATCAAATGCGTAACAACAAGATTGAGCCGGATGTGACTAGCTTCTCGATTTTGCTTCATGTTTATAGCCGCGCGCATAAGCCGGAGCTGGTGCTTGATAAGCTGAGGTTGATGAAGGAGAAAGGGATATTTCCCAATGTGGTGATGTATACCTCGGTTATTAAGTGCCTTGCTTCGTGTGGGAGGCTTGAGGATGCAGAGAGGTTGCTTGAGGAGATGGTGAAGGATGGAGTGAGTCCGTGTGCCGCAACGTATAATTGCTTCTTTAAGGAGTATAGAGGGAGGAAGGATGCTGAGAGTGCTTTGAGGATGTTTAAGAGGATGAAGGAGGATGGGTTGTGTGCGCCGAGCTCGCACACCTATGTGATTTTGATTAGGATGTTTTTGAGGTTGGACATGATCAGATTTGTGAAGGAAATATGGGAAGATATGAAGGTCACTGGAGCGGGGCCGGATTTGGATTTGTACACGGTTTTGATACATGGGTTGTGTGAGAGGCAGAACTGGAGGGAGGCTTGCCATTATTTTGTTGAGATGATAGAGAAAGGGTTTCTTCCTCTGAAAAGTACCTTTGAGACCCTTTATAGGGGGCTAATTCAGGCTGATATGTTAAGGACTTGGAGGAGATTGAAGAAGAAGCTTGATGAAGAATCAATAACTTTTGGTTCAGAGTTTCAGAATTATCATTTGAAACCTTATAGGAGATAA 1530 0.4987 MMLQQVRAFLKPRQSSVLSPPFLHRFCSAPPPLSESNDAELVSNLLLQHHNPFHAAESSLQLHGITLTPDLLFQTLLRLKNHSKIALSLFHYAKTLPNPPLTHASYTLLIDSLAKVRQFDVAWQLIVEMAQCNLHPTPATFLTLIRRLVAAGLTRQAVRAFHDIDAFAKTTPDDFCFLLDTLCKYGYVRLAVEVFNRNRTTFPPNVKIYTVLIYGWCKLGKVKMAQTFLNEMIERGIEPNVVTYNVLLNGVCRKVSLHPEERFERTIRNAEEVFDQMRNNKIEPDVTSFSILLHVYSRAHKPELVLDKLRLMKEKGIFPNVVMYTSVIKCLASCGRLEDAERLLEEMVKDGVSPCAATYNCFFKEYRGRKDAESALRMFKRMKEDGLCAPSSHTYVILIRMFLRLDMIRFVKEIWEDMKVTGAGPDLDLYTVLIHGLCERQNWREACHYFVEMIEKGFLPLKSTFETLYRGLIQADMLRTWRRLKKKLDEESITFGSEFQNYHLKPYRR* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2225 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Pvu9g2225 509 PANTHER OS08G0369200 PROTEIN 22 508 - -
Pvu9g2225 509 Gene3D Tetratricopeptide repeat domain 66 173 IPR011990 GO:0005515
Pvu9g2225 509 Gene3D Tetratricopeptide repeat domain 264 365 IPR011990 GO:0005515
Pvu9g2225 509 Gene3D Tetratricopeptide repeat domain 366 494 IPR011990 GO:0005515
Pvu9g2225 509 TIGRFAM PPR: pentatricopeptide repeat domain 429 460 IPR002885 -
Pvu9g2225 509 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Pvu9g2225 509 TIGRFAM PPR: pentatricopeptide repeat domain 358 388 IPR002885 -
Pvu9g2225 509 TIGRFAM PPR: pentatricopeptide repeat domain 208 241 IPR002885 -
Pvu9g2225 509 TIGRFAM PPR: pentatricopeptide repeat domain 322 354 IPR002885 -
Pvu9g2225 509 TIGRFAM PPR: pentatricopeptide repeat domain 105 137 IPR002885 -
Pvu9g2225 509 Pfam PPR repeat 430 458 IPR002885 -
Pvu9g2225 509 Pfam PPR repeat 105 133 IPR002885 -
Pvu9g2225 509 Gene3D Tetratricopeptide repeat domain 174 263 IPR011990 GO:0005515
Pvu9g2225 509 Pfam PPR repeat family 204 253 IPR002885 -
Pvu9g2225 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Pvu9g2225 509 Coils Coil 260 280 - -
Pvu9g2225 509 Pfam Pentacotripeptide-repeat region of PRORP 267 400 IPR033443 -
Pvu9g2225 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Pvu9g2225 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
Pvu9g2225 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Pvu9g2225 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Pvu9g2225 509 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 22 508 - -
Pvu9g2225 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2225 Pvu-Chr9 31827856 31829385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2225 71 493 Miscellaneous Gene Families AT4G11690 26.959 1.11e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2225 - - gmx:100804639 879.782