LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g02702	ATGAGTTTGGTTGCAGGATCCTACGAGAAATTCATCTGGGGTCTCACCCTAAACCCCCAATCCCAATCTCTAACCCCTCTCTTCTCCTACCCTTCCCACCTCTCCTCCATCAAGACCGTCGCGGTCTCCGCCTCCGTCGTTGCCTCCGGTGGCGAGGACGACACCATACACCTCTACGACCTCTCCGCCGCCTCCTCCCTCGGCTCCCTCCACCACCACTCCGCCACCGTCACCGCCCTTTCATTCTACACCCCTCCCAACCTCCCCTTCCCTCGCAACCTCATCTCCGCCGACGCCGCTGGCTCTGTTTCCATCGTTGATGCCGATGGCTTCGTCCACCTCACCACCATCTCCGTCCACCGCAATGCCGCCATCAACGACCTCGCCCTACACCCCTCCGGCGAGCGCGCCCTCACCGTCGCCCGCGACAACTGCCTCGCCGTCGTCAACCTCGTCCGCGGCCGCCGCAACTGCTGCTTGCGCCTCGACAAGGAGGCTACTCTGGTCAAGTTCGACGTCTCCGGCGACCGCTTCTTCATGGCCGCGAAGGAGAAGGTTTCCGTCCACCAGACAGAGGATGCGCGGATATTGTTCGACTTGGAATGCTCCAAGCCCGTTCTCTGCGCTGCTCCTGCTAGGAATGGACTTCTTTATACTGGTGGTGAGGACAAAAATATCACAGCATGGGATATCAATACTGGAAAAGTTGCATATTGCTTGGAAGAAGCACATACTTCCCGTATCAAAGGTATTGTCATACTCACAGATAGTGATGGTGCTACAGAGGATGACCCTTACCTAGTGGCATCTGCATCATCTGATGGCAATATACGTGTCTGGGATGTTCGAATGACAGCTAGAAAGAAACCGCTAGCTGAATATAACACAAGATCGAGATTGACATGCCTTGCTGGAACAAGTCTCCGATTCCGAAGGCAACGACGGCAGGATGGGAGTAAATCGAAGGTAGTTAAACGACAACGACTCCAGGCTGGAAAGAGTAAATCAAAGGCAGAGGATTAA	1023	0.5533	MSLVAGSYEKFIWGLTLNPQSQSLTPLFSYPSHLSSIKTVAVSASVVASGGEDDTIHLYDLSAASSLGSLHHHSATVTALSFYTPPNLPFPRNLISADAAGSVSIVDADGFVHLTTISVHRNAAINDLALHPSGERALTVARDNCLAVVNLVRGRRNCCLRLDKEATLVKFDVSGDRFFMAAKEKVSVHQTEDARILFDLECSKPVLCAAPARNGLLYTGGEDKNITAWDINTGKVAYCLEEAHTSRIKGIVILTDSDGATEDDPYLVASASSDGNIRVWDVRMTARKKPLAEYNTRSRLTCLAGTSLRFRRQRRQDGSKSKVVKRQRLQAGKSKSKAED	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g02702	340	ProSitePatterns	Trp-Asp (WD) repeats signature.	268	282	IPR019775	-
	Spst9g02702	340	Gene3D	-	203	325	IPR015943	GO:0005515
	Spst9g02702	340	ProSiteProfiles	Trp-Asp (WD) repeats profile.	267	283	IPR001680	GO:0005515
	Spst9g02702	340	PANTHER	PAK1 INTERACTING PROTEIN 1	1	334	-	-
	Spst9g02702	340	MobiDBLite	consensus disorder prediction	315	331	-	-
	Spst9g02702	340	PRINTS	G protein beta WD-40 repeat signature	217	231	IPR020472	-
	Spst9g02702	340	PRINTS	G protein beta WD-40 repeat signature	268	282	IPR020472	-
	Spst9g02702	340	PRINTS	G protein beta WD-40 repeat signature	47	61	IPR020472	-
	Spst9g02702	340	Pfam	WD domain, G-beta repeat	26	60	IPR001680	GO:0005515
	Spst9g02702	340	Pfam	WD domain, G-beta repeat	243	281	IPR001680	GO:0005515
	Spst9g02702	340	SMART	WD40_4	110	150	IPR001680	GO:0005515
	Spst9g02702	340	SMART	WD40_4	63	107	IPR001680	GO:0005515
	Spst9g02702	340	SMART	WD40_4	23	60	IPR001680	GO:0005515
	Spst9g02702	340	SMART	WD40_4	193	230	IPR001680	GO:0005515
	Spst9g02702	340	SMART	WD40_4	233	281	IPR001680	GO:0005515
	Spst9g02702	340	SUPERFAMILY	WD40 repeat-like	18	284	IPR036322	GO:0005515
	Spst9g02702	340	MobiDBLite	consensus disorder prediction	314	340	-	-
	Spst9g02702	340	Gene3D	-	2	202	IPR015943	GO:0005515
	Spst9g02702	340	ProSiteProfiles	Trp-Asp (WD) repeats profile.	30	69	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g02702	Spst-Chr9	61141173	61143757	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g02702	24	282	Miscellaneous Gene Families	AT5G08390	20.463	1.30e-08	54.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g02702	K14830		-	gmx:100777673	556.214